Phyre 2 alignment of P0A959 with c2o0rA

Job Description P0A959
Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012

Rank 23 Aligned Residues 375

% Identity 21% Template c2o0rA_

PDB info PDB header:transferase Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase); PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence	S	K	L	E	N	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	.	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q
Query Conservation																																																											.
Alig confidence																				.	.	.	.	.													.	.	.																				.
Template Conservation																				.	.	.	.	.													.	.	.
Template Sequence	S	R	L	R	P	Y	A	T	T	V	F	A	E	M	S	A	L	A	T	.	.	.	.	.	R	I	G	A	V	N	L	G	Q	G	F	P	.	.	.	D	E	D	G	P	P	K	M	L	Q	A	A	Q	D	A	I	A	G	G	V	N	Q	Y	P	P	G	P	G	S	A	P	L	R	R	A	I	A	A	Q	R	R
Template Known Secondary structure	G	G	G	G	G	G	S	S												.	.	.	.	.	T	T	T				S	S		S	S		.	.	.	S	S																T	T			S				T	T
Template Predicted Secondary structure																				.	.	.	.	.													.	.	.
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.

	87	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure											.																																																										.
Query SS confidence											.																																																										.
Query Sequence	A	R	G	M	R	D	V	T	V	E	.	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	.	W	F	P	D	L	D	D	I	R	A	K
Query Conservation											.																																																										.
Alig confidence											.																																																										.
Template Conservation
Template Sequence	R	H	F	G	V	D	Y	D	P	E	T	E	V	L	V	T	V	G	A	T	E	A	I	A	A	A	V	L	G	L	V	E	P	G	S	E	V	L	L	I	E	P	F	Y	D	S	Y	S	P	V	V	A	M	A	G	A	H	R	V	T	V	P	L	V	P	D	G	R	G	F	A	L	D	A	D	A	L	R	R	A
Template Known Secondary structure									T	T	T	S																					T	T								S			T	T								T	T												T	T
Template Predicted Secondary structure
Template SS confidence
	76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	T	P	R	T	R	A	L	I	I	N	S	P	H	N	P	T	G	A	V	L	S	A	T	E	L	A	A	I	A	E	I	A	V	A	A	N	L	V	V	I	T	D	E	V	Y	E	H	L	V	F	D	H	A	R	H	L	P	L	A	G	F	D	G	M	A	E	R	T	I	T	I	S	S	A	A	M	F	N	C
Template Known Secondary structure			T	T								S	S		T	T	T																			T	T								T	T	T	T		B		T	T						G	G	G	S	T	T	T	G	G	G											S
Template Predicted Secondary structure
Template SS confidence
	156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S
Query Conservation
Alig confidence																								.	.	.	.	.																							.	.	.
Template Conservation																								.	.	.	.	.																							.	.	.
Template Sequence	T	G	W	K	I	G	W	A	C	G	P	A	E	L	I	A	G	V	R	A	A	K	Q	.	.	.	.	.	Y	L	S	Y	V	G	G	A	P	F	Q	P	A	V	A	L	A	L	D	T	E	D	.	.	.	A	W	V	A	A	L	R	N	S	L	R	A	R	R	D	R	L	A	A	G	L	T	E	I	G	F	A
Template Known Secondary structure	T	T	T																					.	.	.	.	.			T	S				T	T														.	.	.																									T
Template Predicted Secondary structure																								.	.	.	.	.																							.	.	.
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.				.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	.	.	.	H	F	R	I	V	T	L	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S
Query Conservation																																																				.	.	.
Alig confidence																		.	.																																	.	.	.
Template Conservation																		.	.
Template Sequence	V	H	D	S	Y	G	T	Y	F	L	C	A	D	P	R	P	L	.	.	G	Y	D	D	S	T	E	F	C	A	A	L	P	E	K	V	G	V	A	A	I	P	M	S	A	F	C	D	P	A	D	V	W	N	H	L	V	R	F	T	F	C	K	R	D	D	T	L	D	E	A	I	R	R	L	S	V	L	A	E
Template Known Secondary structure						B	S	S							G	G	G	.	.	T																S						G	G	G	G	S						G	G	G								S													G	G	G	G
Template Predicted Secondary structure																		.	.
Template SS confidence
	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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