Phyre 2 alignment of P0A959 with c2huuA

Job Description P0A959
Confidence 99.95% Date Thu Jan 5 11:09:27 GMT 2012

Rank 100 Aligned Residues 351

% Identity 13% Template c2huuA_

PDB info PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q
Query Conservation
Alig confidence									.	.	.	.	.																																								.	.	.	.				.
Template Conservation									.	.	.	.	.																																								.	.	.	.				.
Template Sequence	N	K	L	L	M	G	P	G	.	.	.	.	.	P	S	N	A	P	Q	R	V	L	D	A	M	S	R	P	I	L	G	H	L	H	P	E	T	L	K	I	M	D	D	I	K	E	G	V	R	Y	L	F	.	.	.	.	Q	T	N	.	N	I	A	T	F	C	L	S	A	S	G	H	G	G	M	E	A	T	L	C
Template Known Secondary structure						S	S	S	.	.	.	.	.												T	T	S					T	T	S																			.	.	.	.	T			.		S						S	S
Template Predicted Secondary structure									.	.	.	.	.																																								.	.	.	.				.
Template SS confidence
	19	20	.	.	.	.	.	.						.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.					.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.

	114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I
Query Conservation
Alig confidence																																																																											.	.
Template Conservation																																																																											.	.
Template Sequence	N	L	L	E	D	G	D	V	I	L	I	G	H	T	G	H	W	G	D	R	S	A	D	M	A	T	R	Y	G	A	D	V	R	V	V	K	S	K	V	G	Q	S	L	S	L	D	E	I	R	D	A	L	L	I	H	K	P	S	V	L	F	L	T	Q	G	D	S	S	T	G	V	L	Q	G	.	.	L	E	G	V
Template Known Secondary structure					T	T								S	S													T	T										T	T																		S						S			T	T	T	T					.	.		T	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.

	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.										.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	.	.	.	.	.	.	.	.	.	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	A	L	C	H	Q	H	N	C	L	L	I	V	D	T	V	A	S	L	G	G	A	P	M	F	M	D	R	W	E	I	D	A	M	Y	T	G	S	Q	V	L	G	A	P	P	G	I	T	P	V	S	F	S	H	R	A	V	E	R	Y	K	R	R	N	T	K	V	K	V	Y	Y	W	D	M	S	L	V	G	D	Y
Template Known Secondary structure							T	T								T	T	T	B	T	T	B				T	T	T	T	T		S													S	S																T		S	S			S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	.	.	.	G	A	L	Y	M	F	P	K	I	D	A	K
Query Conservation																																																																		.	.	.
Alig confidence																												.	.																																					.	.	.
Template Conservation																												.	.
Template Sequence	W	G	C	F	G	R	P	R	I	Y	H	H	T	I	S	S	T	L	L	Y	G	L	R	E	A	I	A	.	.	M	A	C	E	E	G	L	P	A	L	I	A	R	H	E	D	C	A	K	R	L	Y	R	G	L	Q	D	A	G	F	E	L	Y	A	D	P	K	D	R	L	S	T	V	T	T	I	K	V	P	Q	G
Template Known Secondary structure	T	T		S	S	S					S																	.	.																												T	T			B	S	S		G	G	G	B		T	T								T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
	248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	.	.	.	T	L	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H	Q
Query Conservation																																								.	.	.
Alig confidence		.	.	.	.																										.	.								.	.	.
Template Conservation		.	.	.	.																										.	.
Template Sequence	V	.	.	.	.	D	W	L	K	A	A	Q	Y	A	M	K	T	Y	L	V	E	I	S	G	G	L	G	P	T	A	.	.	G	Q	V	F	R	I	G	L	M	G	Q	N	A	T	T	E	R	V	D	R	V	L	Q	V	F	Q	E	A	V	A	A	V	K	P
Template Known Secondary structure		.	.	.	.																		B				G	G	G	T	.	.	T	T								G	G	G		S
Template Predicted Secondary structure		.	.	.	.																										.	.
Template SS confidence
	326					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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