Job Description P0A959 Confidence 99.79% Date Thu Jan 5 11:09:27 GMT 2012 Rank 214 Aligned Residues 333 % Identity 12% Template c2eo5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:419aa long hypothetical aminotransferase; PDBTitle: crystal structure of 4-aminobutyrate aminotransferase from sulfolobus2 tokodaii strain7 Resolution 1.90 Å

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		31	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		E	G	N	K	V	L	K	L	N	I	G	N	.	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V
Query Conservation														.
Alig confidence														.																																																					.
Template Conservation																																																																			.
Template Sequence		D	G	N	K	Y	L	D	F	T	S	G	I	G	V	N	N	L	G	W	P	S	H	P	E	V	I	K	I	G	I	E	Q	M	Q	K	L	A	H	A	A	A	N	D	F	Y	N	I	P	Q	L	E	L	A	K	K	L	V	T	Y	S	P	G	N	F	Q	.	K	K	V	F	F	S	N	S	G	T	E	A	I	E
Template Known Secondary structure		T	S						S	S	G	G	G	G	T	T	T	T		B	S														T	T	S				S		S		S																S	S		S	S		.							S	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.															.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.															.	.	160
Predicted Secondary structure												.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	M	Q	A	L	L	N	S	G	.	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	D
Query Conservation												.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	I	K	V	V	K	N	T	G	R	K	Y	I	I	A	F	L	G	G	F	H	G	R	T	F	G	S	I	S	L	T	A	S	K	A	V	Q	R	S	I	V	G	P	F	M	P	G	V	I	H	V	P	Y	P	N	P	Y	R	N	P	W	H	I	N	G	Y	E	N	P	S	E	L	V	N	R	V	I	E	F
Template Known Secondary structure									T	T	S								T	T					S	S									S		G	G	G	G		S	S					T	T									S	S	S		T	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		161	.	.	.	.								.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.
Query Sequence		I	R	A	K	I	.	.	.	.	.	.	.	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I
Query Conservation							.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																																																						.	.	.	.
Template Conservation																																																																			.	.	.	.
Template Sequence		I	E	D	Y	I	F	V	N	L	V	P	P	E	E	V	A	G	I	F	F	E	P	I	Q	G	E	G	G	Y	V	I	P	P	K	N	F	F	A	E	L	Q	K	L	A	K	K	Y	G	I	L	L	V	D	D	E	V	Q	M	G	L	G	R	T	G	K	.	.	.	.	L	F	A	I	E	N	F	N	T	V	P
Template Known Secondary structure					T					T			G	G	G								S	S	B	T	T	T	T	S	B				T	T													T								T	T	T	T	T	T	T	T	S	S	.	.	.	.	S	S	G	G	G	G	G	T
Template Predicted Secondary structure																																																																			.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Sequence		D	V	I	T	L	A	K	A	L	G	G	G	I	M	P	I	G	A	T	I	F	R	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	K	T	F	G	G	N	A	L	A	C	A	I	G	S	K	V	I	D	.	.	.	.	.	.	I	V	K	D	L	L	P	H	V	N	E	I	G	K	I	F
Template Known Secondary structure		S						G	G	G	G	T	T	T	S									G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.														300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	.	.	P	R	V	D	D	I	E	L	S
Query Conservation																																																																							.	.
Alig confidence																.	.	.													.	.	.	.	.																			.	.	.	.	.	.												.	.
Template Conservation																.	.	.													.	.	.	.	.																			.	.	.	.	.	.
Template Sequence		A	E	E	L	Q	G	L	A	D	D	V	R	G	I	.	.	.	G	L	A	W	G	L	E	Y	N	E	K	K	.	.	.	.	.	V	R	D	R	I	I	G	E	S	F	K	R	G	L	L	L	L	P	.	.	.	.	.	.	A	G	R	S	A	I	R	V	I	P	P	L	V	I	S	E	E	E	A	K	Q	G
Template Known Secondary structure						T	T	S	S	S						.	.	.	T	T							S				.	.	.	.	.												T	T						.	.	.	.	.	.		T	T	T								T	T
Template Predicted Secondary structure																.	.	.													.	.	.	.	.																			.	.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.						.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.							.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	F	A	R	F	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	I	L	K	K	V	I	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions