Job Description P0A959 Confidence 99.69% Date Thu Jan 5 11:09:27 GMT 2012 Rank 226 Aligned Residues 346 % Identity 13% Template c2a7vA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2 Resolution 2.04 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G
Query Conservation
Alig confidence																								.	.	.	.									.	.	.	.	.															.	.							.	.
Template Conservation																								.	.	.	.									.	.	.	.	.															.	.							.	.
Template Sequence		L	S	D	S	D	P	E	M	W	E	L	L	Q	R	E	K	D	R	Q	C	R	G	.	.	.	.	L	E	L	I	A	S	E	N	.	.	.	.	.	F	C	S	R	A	A	L	E	A	L	G	S	C	L	.	.	N	N	K	Y	S	E	.	.	G	V	D	E	I	E	L	L	C	Q	R	R	A	L	E	A	F
Template Known Secondary structure																							S	.	.	.	.					T	T			.	.	.	.	.											T	S	G	G	.	.	G	T					.	.			T														T
Template Predicted Secondary structure																								.	.	.	.									.	.	.	.	.															.	.							.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.						.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		M	R	D	V	T	V	E	D	I	.	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R
Query Conservation											.
Alig confidence											.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	D	P	A	Q	W	G	V	N	V	Q	P	Y	S	G	S	P	A	N	L	A	V	Y	T	A	L	L	Q	P	H	D	R	I	M	G	Y	K	L	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	G	L	I	D	Y	N	Q	L	A	L	T	A	R	L	F
Template Known Secondary structure		T			T	T	T								S	S															S									B		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		S	B
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.																							.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R
Query Conservation
Alig confidence																		.	.	.	.																																					.	.	.	.															.	.
Template Conservation																		.	.	.	.																																					.	.	.	.															.	.
Template Sequence		R	P	R	L	I	I	A	G	T	S	A	Y	A	R	L	I	.	.	.	.	D	Y	A	R	M	R	E	V	C	D	E	V	K	A	H	L	L	A	D	M	A	H	I	S	G	L	V	A	A	K	V	I	P	S	P	F	.	.	.	.	K	H	A	D	I	V	T	T	T	T	H	K	T	L	.	.	R	G	A	R
Template Known Secondary structure				S							S	S			S			.	.	.	.												T	T								G	G	G						T	T	S	S			G	G	.	.	.	.	G	T		S						S	S	G	G	G	.	.		S		S
Template Predicted Secondary structure																		.	.	.	.																																					.	.	.	.															.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.					.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270
		249	250	.	.	.	.	.	.	.	.	.	260												.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	W	M	V	L	N	G	P	K	K	H	.	.	.	.	.	.	.	.	.	.	.	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																																												.
Template Sequence		S	G	L	I	F	Y	R	K	G	V	K	A	V	D	P	K	T	G	R	E	I	P	Y	T	F	E	D	R	I	N	F	A	V	F	P	S	L	Q	G	G	P	H	N	H	A	I	A	A	V	A	V	A	L	K	Q	A	C	T	.	P	M	F	R	E	Y	S	L	Q	V	L	K	N	A	R	A	M	A	D	A	L
Template Known Secondary structure										S						T	T	T																	T	T	T	T			S																		S	.
Template Predicted Secondary structure																																																												.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.							.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.						.	.	.	.	.	.
Query SS confidence																																																													.	.	.						.	.	.	.	.	.
Query Sequence		N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	.	.	.	F	R	I	V	T	.	.	.	.	.	.	L	P	R	V	D	D	I
Query Conservation																																																													.	.	.						.	.	.	.	.	.
Alig confidence																												.	.	.	.																														.	.	.						.	.	.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		L	E	R	G	Y	S	L	V	S	G	G	T	D	N	H	L	V	L	V	D	L	R	P	K	G	L	.	.	.	.	D	G	A	R	A	E	R	V	L	E	L	V	S	I	T	A	N	K	N	T	C	P	G	D	R	S	A	I	T	P	G	G	L	R	L	G	A	P	A	L	T	S	R	Q	F	R	E	D	D	F
Template Known Secondary structure				T	T				G	G	G	S		S	S	S							T	T	T	T		.	.	.	.												T	T									T	T				S	S	S		S						S						T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.					.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	V	V	D	F	I	D	E	G	V	N	I	G	L	E	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions