Job Description P0A959 Confidence 99.72% Date Thu Jan 5 11:09:27 GMT 2012 Rank 224 Aligned Residues 317 % Identity 12% Template c1c4kA_ PDB info PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr) Resolution 2.70 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	.	A	V	S	L	S	S	G	K	A	V	H	Y
Query Conservation																																																																					.
Alig confidence																										.	.	.	.	.	.	.																																					.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		L	I	H	E	G	P	A	V	A	A	E	K	H	A	A	R	V	Y	N	A	D	K	T	Y	.	.	.	.	.	.	.	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	V	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	S	A	L	A	M	A	G	G	R	P	V	Y	L
Template Known Secondary structure		T	T	T	B	T													T	T		S				.	.	.	.	.	.	.			S	S																T	T							T	T										T	T	T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.								.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		147	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.										170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Query Sequence		L	C	D	E	S	S	D	W	F	P	.	.	.	.	.	.	.	.	D	L	D	D	I	R	A	K	I	T	P	R	T	.	.	.	.	.	.	.	.	.	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I
Query Conservation												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																																																														.	.	.
Template Sequence		Q	T	N	R	N	P	Y	G	F	I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	Y	N	A	H	E	.	.	.	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D	S	A
Template Known Secondary structure							T	T								G	G	G	S									T	T	T	S	S					T		S			B	S						S	B		T	T	S								.	.	.						G	G	G	B	S							T
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.				.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.								.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																																									.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																																									.	.	.	.	.	.	.
Query Sequence		Y	D	K	I	L	Y	D	D	A	.	.	.	.	.	.	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	.	.	.	.	.	.	.	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L
Query Conservation											.	.	.	.	.	.																																									.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																										.															.	.	.	.	.	.	.
Template Conservation																																										.
Template Sequence		W	V	G	Y	E	Q	F	I	P	M	M	R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	.	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	M	S	T	S	P
Template Known Secondary structure		T			G	G	G	S	S	G	G	G	G	G	G		T	T	S						T	T	S													S	S	.			T	T									G	G	G	T	T	S	T	T															S		S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	P	M	Y	A	A	L	D	V	N	A	A	M	Q	E	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y	W	R	F	E	K	G	A	K
Template Known Secondary structure																	S																									T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G	G	B			T	T		T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
										321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.							.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																							.	.	.	.	.	.																																									.	.
Query SS confidence		.	.	.	.	.	.	.	.																							.	.	.	.	.	.																																									.	.
Query Sequence		.	.	.	.	.	.	.	.	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	.	.	.	.	.	.	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	.	.	P	R
Query Conservation		.	.	.	.	.	.	.	.																							.	.	.	.	.	.																																									.	.
Alig confidence		.	.	.	.	.	.	.	.										.	.	.											.	.	.	.	.	.																						.	.	.	.	.	.														.	.
Template Conservation																			.	.	.																																						.	.	.	.	.	.
Template Sequence		W	H	A	Y	E	G	Y	G	D	N	Q	Y	Y	V	D	P	N	.	.	.	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	D	H	G	I	I	P	.	.	.	.	.	.	E	K	S	D	L	N	S	I	L	F	L	M	T	P	A	E	T
Template Known Secondary structure		T	T			T	T			T	T						T	T	.	.	.							S	S			T	T	T	T				S	S														T	T				.	.	.	.	.	.	S				S	S								T	T
Template Predicted Secondary structure																			.	.	.																																						.	.	.	.	.	.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.				.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.							.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	K	M	N	N	L	I	T	Q	L	L	Q	L	Q	R	L	I	E	E
Template Known Secondary structure																					T
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions