Return to main results Retrieve Phyre Job Id

Job DescriptionP00968
Confidence100.00%DateThu Jan 5 10:57:25 GMT 2012
Rank2Aligned Residues514
% Identity18%Templatec3u9sE_
PDB info PDB header:ligaseChain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60........ .70......
Predicted Secondary structure 






























........

Query SS confidence 































































. . . . . . . .







Query Sequence  TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEP. . . . . . . . IHWEVVRK
Query Conservation    









 
 

 
 


 

 







 

 



  

 

 
    

  

 
........
  
 
  
Alig confidence 















...........




































........







Template Conservation       









 ...........






 


 



 

 
  
     

  
 
       



 
 

 
Template Sequence  RSIQRLLVANRGEIAC. . . . . . . . . . . RVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIA
Template Known Secondary structure 


S


...........TT

STTSS
STTTSSS


SSSTTTTT
Template Predicted Secondary structure 





...........





















Template SS confidence 















































































   47..50.........60.. .......70.........80.........90.........100.........110.....
 
   77..80.........90.........100.........110.........120.........130.........140....... ..150....
Predicted Secondary structure 



























..

Query SS confidence 






































































. .






Query Sequence  IIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSG. . IAHTMEE
Query Conservation 

  
 





  

 
 
     
 
 


   

  

    

    

   
  
   




 
 .. 
 
 

Alig confidence 














...










..







































..






Template Conservation 

     


 

 
...



    
  ..
   

  


  


    

   
      


  
       
 

Template Sequence  AALASGAQAIHPGYG. . . FLSENADFARA. . CEEAGLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLET
Template Known Secondary structure  TT



SS...TTSS
T..TTT
SSS
TTSTTT





SS


TT
Template Predicted Secondary structure 






...




..

















Template SS confidence 















































































   116...120.........130 .........140. ........150.........160.........170.........180.........190
 
   155....160.........170.........180.........190.........200.........210.........220.........230....
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  ALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSI
Query Conservation 
   
  








    

 

 

 
 


  
   
   
    




 
 
 







 
  

 
 
   
Alig confidence 















......
















....


































..
Template Conservation      
  








......     
    

  
  ....      



  
 
   


 
  
  
 

   ..
Template Sequence  FRREAGRIGYPVLLKA. . . . . . AAMKVVEREAELAEALS. . . . SAQRARMLVEKYLLKPRHVEIQVFADRHGHCLYLN. .
Template Known Secondary structure  TT
S

......



SSGGGT....S








SS
B

TTS
..
Template Predicted Secondary structure 




......







....













..
Template SS confidence 















































































   191........200...... ...210.........220... ......230.........240.........250........
 
   235....240.........250.........260.........270.........280.........290.........300.........310....
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  ENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKA
Query Conservation 
  

 


 



 



 

 
     

  
 

 
 


  
  



 

   
  


















Alig confidence 











































.









.























Template Conservation   
  



  

 

 


  
       
   
  

 



 .
   



 
. 

  












 


  
Template Sequence  ERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYV. GAGTVEFLLD. ERGQFFFMEMNTRLQVEHPVTEAI
Template Known Secondary structure 


BSSSSB
S
SS

TT

.S
B
.TTS


SS

TT
Template Predicted Secondary structure 














.


.










Template SS confidence 















































































   273......280.........290.........300.........310...... ...320...... ...330.........340.........350
 
   315....320.........330.........340...... ...350.........360.........370.........
Predicted Secondary structure 
















............





















...
Query SS confidence 































. . . . . . . . . . . .
































. . .
Query Sequence  TGFPIAKVAAKLAVGYTLDELMNDITGGRTPA. . . . . . . . . . . . SFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMK. . .
Query Conservation 





 
 



 
  
 

 
  
   
 
............ 


  





 
   
 

      

  

...
Alig confidence 

























.




............







.























...
Template Conservation 





   
 

 
  
        .  
 

  

 



   
 
  
 .
           

 
  
  
  
  
Template Sequence  TGLDLVAWQIRVARGEALPLTQEQVP. LNGHAIEVRLYAEDPEGDFLPASGR. LMLYREAAAGPGRRVDSGVREGDEVSP
Template Known Secondary structure  T

TTS


SS
GGG

.

SSS
TTTTS




B.
S



BTT


TT
B

S
Template Predicted Secondary structure 















.















.














Template SS confidence 















































































   351........360.........370...... ...380.........390.........400. ........410.........420........
 
   380.........390.........400.. .......410.........420.........430.........440.........450....
Predicted Secondary structure  ....




.


























Query SS confidence  . . . .






















.



















































Query Sequence  . . . . SVGEVMAIGRTQQESLQKALRGL. EVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFN
Query Conservation  ....
 



 


 




 

 

 .                         
  
   
      
   
        
Alig confidence  ....






















.












........








.....
















Template Conservation    

 

 

  
  
 

  
   

    
 
  

   ........
   
    .....
      
  
      
Template Sequence  FYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNLAF. . . . . . . . LRRILGHPA. . . . . FAAAELDTGFIARHQDD
Template Known Secondary structure  SS

SS
SS

T........SS.....TT

STTT
Template Predicted Secondary structure 














........

.....






Template SS confidence 















































































   429430.........440.........450.........460......... 470........ .480.........490.....
 
   455....460.........470.........480.........490.........500..... ....510.........520.........530.
Predicted Secondary structure 













...









Query SS confidence 


















































. . .

























Query Sequence  LTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKL. . . AGVREAEIRKLRDQYDLHPVYKRVDT
Query Conservation   
 

  

     
                   
  

  



  

  ...       
   
    
 
  
 

 
Alig confidence 


















































...

























Template Conservation                                             
          
                         
Template Sequence  LLPAPQALPEHFWQAAAEAWLQSEPGHRRDDDPHSPWSRNDGWRSALARESDLMLRCRDERRCVRLRHASPSQYRLDGDD
Template Known Secondary structure  S






TTS



BTTBTT
GGG

S


SSS
TTSSS
STT
Template Predicted Secondary structure 






































Template SS confidence 















































































   496...500.........510.........520.........530.........540.........550.........560.........570.....
 
   532.......540.........550.........560....
Predicted Secondary structure 























Query SS confidence 
































Query Sequence  CAAEFATDTAYMYSTYEEECEANPSTDREKIMV
Query Conservation   
 

   
 
 
 

    
        



Alig confidence 



















.











Template Conservation                   
  .            
Template Sequence  LVSRVDGVTRRSAALRRGRQ. LFLEWEGELLAI
Template Known Secondary structure 
SSS

TT.TT
Template Predicted Secondary structure 



.



Template SS confidence 
































   598.600.........610....... ..620.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions