Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 49 Aligned Residues 287 % Identity 16% Template c3tqtB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: structure of the d-alanine-d-alanine ligase from coxiella burnetii Resolution 1.88 Å

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		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.				.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Predicted Secondary structure																													.	.	.																																														.	.	.	.	.
Query SS confidence																													.	.	.																																														.	.	.	.	.
Query Sequence		R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	H	A	.	.	.	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	.	.	.	.	.
Query Conservation																													.	.	.																																														.	.	.	.	.
Alig confidence										.		.	.	.	.														.	.	.																																														.	.	.	.	.
Template Conservation										.		.	.	.	.
Template Sequence		K	L	H	I	S	V	L	C	.	G	.	.	.	.	G	Q	S	T	E	H	E	I	S	I	Q	S	A	K	N	I	V	N	T	L	D	A	A	K	Y	L	I	S	V	I	F	I	D	H	V	G	R	W	Y	L	I	D	Q	P	E	M	F	L	A	H	S	P	D	H	L	V	K	E	G	S	A	R	P	I	T	I
Template Known Secondary structure										.		.	.	.	.		S	S	T	T															S		T	T	T										T	T	S														S									T		S
Template Predicted Secondary structure										.		.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.		.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
												631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I
Query Conservation		.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		A	F	K	P	W	Q	S	L	D	G	R	R	Y	S	A	D	C	V	F	P	M	V	H	G	T	Q	G	E	D	G	A	L	Q	G	L	L	E	L	L	N	L	P	Y	V	G	A	N	V	Q	S	S	A	V	C	M	E	K	D	L	T	K	T	V	L	R	A	G	G	I	P	V	V	D	W	H	T	L	S	P	R
Template Known Secondary structure																	S								S	T	T	T	T	S	S									T	T			B	S	S											S											T	T			B								T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		699	700	.	.	.	.	.	.	.						.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.
Predicted Secondary structure											.	.	.	.	.
Query SS confidence											.	.	.	.	.
Query Sequence		E	M	A	V	E	K	A	K	E	.	.	.	.	.	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V
Query Conservation											.	.	.	.	.
Alig confidence											.	.	.	.	.																																					.	.													.
Template Conservation																																																				.	.													.
Template Sequence		D	A	T	E	G	V	Y	Q	R	L	L	D	R	W	G	T	S	E	L	F	V	K	A	V	S	L	G	S	S	V	A	T	L	P	V	K	T	E	T	E	F	T	K	A	V	K	E	V	F	R	.	.	Y	D	D	R	L	M	V	E	P	R	I	R	.	G	R	E	I	E	C	A	V	L	G	N	G	A	P	K
Template Known Secondary structure		S			T	T										S		S							S	S			S	G	G	G						S												T	T	.	.	T		S										.	S										S	S	S
Template Predicted Secondary structure																																																				.	.													.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.																	.	.	.
Query SS confidence																																																														.																	.	.	.
Query Sequence		L	I	G	G	I	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	.	.	.
Query Conservation																																																														.																	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.																	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	S	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	I	I	T	T	T	T	S	E	S	V	T	K	Q	I	Q	Q	I	A	I	D	A	F	K	M	V	H	C	S	G	M	A	R	V	D	F	F	V	T	P	N	N	K	V	L	V	N	E	I	N	T	I	P	G	F	T	N	I	S
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											T	T													T	T										S	S				S	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.																	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
			850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	A	A	R	V	M
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		M	Y	P	K	M	W	E	A	S	G	L	P	C	P	N	L	L	D	Q	L	I
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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