Phyre 2 alignment of P00968 with c3q2oB

Job Description P00968
Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012

Rank 26 Aligned Residues 354

% Identity 17% Template c3q2oB_

PDB info PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase

Resolution 1.96 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence	K	S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	E	G	Y	R	V	I	L	V	N	S	N	P	A	T	I	M	T	D	P	E	M	A	D	A	T	Y	I	E	P	I	.	H	W	E	V	V	R	K	I	I	E	K	E	R	P	D	A	V
Query Conservation																																																															.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.																							.	.															.												.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																							.	.																											.	.
Template Sequence	K	T	I	G	I	I	G	G	G	Q	L	G	R	.	.	.	.	.	.	.	.	.	.	.	M	M	A	L	A	A	K	E	M	G	Y	K	I	A	V	L	D	P	T	K	N	S	.	.	P	C	A	Q	V	A	D	I	E	I	V	A	S	Y	D	D	L	K	A	I	Q	H	L	A	E	I	.	.	S	D	V	V
Template Known Secondary structure	S								S					.	.	.	.	.	.	.	.	.	.	.									T	T								S	S	T	T		.	.	T	T	T	T	T		S							T	T												.	.		S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																							.	.																											.	.
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.												.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.

	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q	G	V	L	E	E	F	G	V	T	M	I	G	A	T	A	D	A	I	D	K	A	E	D	R	R	R	F	D	V	A	M	K	K	I	G	L	E	T	A	R	S	G	I	A	H	T	M	E	E	A	L	A	V	A	A	D	V	G	F	P	C
Query Conservation
Alig confidence						.	.	.	.	.										.	.							.	.
Template Conservation						.	.	.	.	.										.	.							.	.
Template Sequence	T	Y	E	F	E	.	.	.	.	.	N	I	D	Y	R	C	L	Q	W	.	.	L	E	K	H	A	Y	.	.	L	P	Q	G	S	Q	L	L	S	K	T	Q	N	R	F	T	E	K	N	A	I	E	K	A	G	L	P	V	A	T	Y	R	L	V	Q	N	Q	E	Q	L	T	E	A	I	A	E	L	S	Y	P	S
Template Known Secondary structure					T	.	.	.	.	.	T									.	.					S		.	.		T	T		S							S	S											T	T											S													S	S
Template Predicted Secondary structure						.	.	.	.	.										.	.							.	.
Template SS confidence
	74	.	.	.	.						.	80	.	.	.	.	.	.	.			.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	167	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence	I	I	R	P	S	F	.	T	M	G	G	S	G	G	G	I	A	Y	N	R	E	E	F	E	E	I	C	A	R	G	L	D	L	S	P	T	K	E	L	L	I	D	E	S	L	I	G	W	K	E	Y	E	M	E	V	V	R	D	K	N	D	N	C	I	I	V	C	S	I	E	N	F	D	A	M	G	I	H	T	G
Query Conservation							.
Alig confidence							.																										.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence	V	L	K	T	T	T	G	G	Y	D	G	K	G	Q	V	V	L	R	S	E	A	D	V	D	E	A	R	K	L	A	N	A	.	.	.	.	A	E	C	I	L	E	K	W	V	P	F	E	K	E	V	S	V	I	V	I	R	S	V	S	G	E	T	K	V	F	P	V	A	E	N	I	H	V	N	N	I	L	H	E
Template Known Secondary structure					S	S	S		T	T	T	T	S					S	S	G	G	G											.	.	.	.	S											S											T	T															T	T
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.					.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	S	I	T	V	A	P	A	Q	T	L	T	D	K	E	Y	Q	I	M	R	N	A	S	M	A	V	L	R	E	I	G	V	E	T	G	G	S	N	V	Q	F	A	V	N	P	K	N	G	R	L	I	V	I	E	M	N	P	R	V	S	R	S	S	A	L	A	S	K	A	T	G	F	P	I	A	K	V	A	A	K
Query Conservation
Alig confidence				.	.	.	.																											.											.
Template Conservation				.	.	.	.																											.											.
Template Sequence	S	I	V	.	.	.	.	P	A	R	I	T	E	E	L	S	Q	K	A	I	A	Y	A	K	V	L	A	D	E	L	E	L	V	.	G	T	L	A	V	E	M	F	A	T	.	A	D	G	E	I	Y	I	N	E	L	A	P	R	P	H	N	S	G	H	Y	T	Q	D	A	C	E	T	S	Q	F	G	Q	H	I	R
Template Known Secondary structure				.	.	.	.	S		S	S																			T	T			.											.	T	T	S									S	S			G	G	G	T	T					B	S	S
Template Predicted Secondary structure				.	.	.	.																											.											.
Template SS confidence
	221	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	L	A	V	G	Y	T	L	D	E	L	M	.	.	N	D	I	T	G	G	R	T	P	A	S	F	E	P	S	I	D	Y	V	V	T	K	I	P	R	F	N	F	E	K	F	A	G	A	N	D	R	L	T	T	Q	M	K	S	V	G	E	V	M	A	I	G	R	T	Q	Q	E	S	L	Q	K	A
Query Conservation												.	.
Alig confidence												.	.																																											.	.	.
Template Conservation																																																								.	.	.
Template Sequence	A	I	C	N	L	P	L	G	E	T	N	L	L	K	P	V	V	M	V	N	I	L	G	E	H	I	E	G	V	L	R	Q	V	N	R	L	T	G	C	Y	L	H	L	Y	G	K	E	E	A	K	A	Q	R	K	M	.	.	.	G	H	V	N	I	L	N	D	N	I	E	V	A	L	E	K	A
Template Known Secondary structure				T								B		S									T	T	T							T	G	G	G		T	T									S	S			T	T				.	.	.								S	S
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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