Phyre 2 alignment of P00968 with c3orqA

Job Description P00968
Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012

Rank 29 Aligned Residues 358

% Identity 18% Template c3orqA_

PDB info PDB header:ligase,biosynthetic protein Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide synthetase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthetase from2 staphylococcus aureus complexed with adp

Resolution 2.23 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence	K	S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	E	G	Y	R	V	I	L	V	N	S	N	P	A	T	I	M	T	D	P	E	M	A	D	A	T	Y	I	E	P	I	.	H	W	E	V	V	R	K	I	I	E	K	E	R	P	D	A	V
Query Conservation																																																															.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																											.	.															.										.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.																											.	.																									.	.
Template Sequence	A	T	I	G	I	I	G	G	G	.	.	.	.	.	.	.	.	.	.	.	Q	L	G	K	X	X	A	Q	S	A	Q	K	X	G	Y	K	V	V	V	L	D	P	S	E	D	C	.	.	P	C	R	Y	V	A	H	E	F	I	Q	A	K	Y	D	D	E	K	A	L	N	Q	L	G	.	.	Q	K	C	D	V	I
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.	.	.													T	T								S		T	T		.	.	T	T	G	G	G	S	S							T	T										.	.				S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.																											.	.																									.	.
Template SS confidence
	10	.	.	.	.	.	.	.	.												.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.

	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q	G	V	L	E	E	F	G	V	T	M	I	G	A	T	A	D	A	I	D	K	A	E	D	R	R	R	F	D	V	A	M	K	K	I	G	L	E	T	A	R	S	G	I	A	H	T	M	E	E	A	L	A	V	A	A	D	V	G	F	P	C
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence	T	Y	E	F	E	N	I	S	A	.	.	.	.	.	.	.	.	.	Q	Q	L	K	L	L	C	E	K	Y	N	I	P	Q	G	Y	Q	A	I	Q	L	L	Q	D	R	L	T	E	K	E	T	L	K	S	A	G	T	K	V	V	P	F	I	S	V	K	E	S	T	D	I	D	K	A	I	E	T	L	G	Y	P	F
Template Known Secondary structure			S	S	T	T	S			.	.	.	.	.	.	.	.	.										S			T	T	T	T								S											T	T			B								S	S	T									T		S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
	75	.	.	.	.	80	.	.	.										.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	I	R	P	S	F	T	M	G	G	S	G	G	G	I	A	Y	N	R	E	E	F	E	E	I	C	A	R	G	L	D	L	S	P	T	K	E	L	L	I	D	E	S	L	I	G	W	K	E	Y	E	M	E	V	V	R	D	K	N	D	N	C	I	I	V	C	S	I	E	N	F	D	A	M	G	I	H	T	G	D
Query Conservation
Alig confidence																						.	.	.																																																								.
Template Conservation																						.	.	.																																																								.
Template Sequence	I	V	K	T	R	F	G	G	Y	D	G	K	G	Q	V	L	I	N	N	E	K	.	.	.	D	L	Q	E	G	F	K	L	I	E	T	S	E	C	V	A	E	K	Y	L	N	I	K	K	E	V	S	L	T	V	T	R	G	N	N	N	Q	I	T	F	F	P	L	Q	E	N	E	H	R	N	Q	I	L	F	K	.
Template Known Secondary structure					S	S	S			T	T	T	T						S	T	T	.	.	.	S									T	T	S																						G	G	G														T	T					.
Template Predicted Secondary structure																						.	.	.																																																								.
Template SS confidence
	146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

	247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	I	T	V	A	P	A	Q	T	L	T	D	K	E	Y	Q	I	M	R	N	A	S	M	A	V	L	R	E	I	G	V	E	T	G	G	S	N	V	Q	F	A	V	N	P	K	N	G	R	L	I	V	I	E	M	N	P	R	V	S	R	S	S	A	L	A	S	K	A	T	G	F	P	I	A	K	V	A	A	K	L
Query Conservation
Alig confidence	.	.								.	.	.																					.											.
Template Conservation	.	.								.	.	.																					.											.
Template Sequence	.	.	T	I	V	P	A	R	I	.	.	.	D	K	T	A	E	A	K	E	Q	V	N	K	I	I	Q	S	I	H	F	I	.	G	T	F	T	V	E	F	F	I	D	.	S	N	N	Q	L	Y	V	N	E	I	A	P	R	P	H	N	S	G	H	Y	S	I	E	A	C	D	Y	S	Q	F	D	T	H	I	L	A
Template Known Secondary structure	.	.				S		S	S	.	.	.															T	T	S				.											.	T	T										S	S			G	G	G	T	T					B	S	S
Template Predicted Secondary structure	.	.								.	.	.																					.											.
Template SS confidence
			222	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

	327	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence	A	V	G	Y	T	L	D	E	.	.	.	L	M	N	D	I	T	G	G	R	T	P	A	S	F	E	P	S	I	D	Y	V	V	T	K	I	P	R	F	N	F	E	K	F	A	G	A	N	D	R	L	T	T	Q	M	K	S	V	G	E	V	M	A	I	G	R	T	Q	Q	E	S	L	Q	K	A	L	R	G	L	E
Query Conservation									.	.	.
Alig confidence									.	.	.																																										.	.	.
Template Conservation																																																					.	.	.
Template Sequence	V	T	G	Q	S	L	P	N	S	I	E	L	L	K	P	A	V	X	X	N	L	L	G	K	D	L	D	L	L	E	N	E	F	N	E	H	P	E	W	H	L	H	I	Y	G	K	S	E	R	K	D	S	.	.	.	R	K	X	G	H	X	T	V	L	T	N	D	V	N	Q	T	E	Q	D	X	Y	A	K	F	E
Template Known Secondary structure		T	T					S				B	S	S																G	G	G	G	G	G		G	G	G								S	S			T	T	.	.	.	S										S													T
Template Predicted Secondary structure																																																					.	.	.
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions