Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 38 Aligned Residues 298 % Identity 20% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	E	K	P	K
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template Sequence		D	R	R	V	R	V	A	V	V	F	G	G	A	I	S	C	.	.	.	.	.	.	.	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	I	T	P	A	G	S	W	V	L	T	D	A	N	V	S	L	P	P	G	A	G	E	.	.	.	.	.	.	.	.	V	L	E	S	V	D
Template Known Secondary structure		T	T															.	.	.	.	.	.	.										S		T	T	T										T	T														T	T				.	.	.	.	.	.	.	.				T		S
Template Predicted Secondary structure																		.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.
		637	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.			.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure														.	.																																																		.	.
Query SS confidence														.	.																																																		.	.
Query Sequence		G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	.	.	I	E	M	A	V	E	K	A	K	E	I	G	Y	P	L
Query Conservation														.	.																																																		.	.
Alig confidence														.	.																																																		.	.
Template Conservation
Template Sequence		V	V	F	P	V	L	H	G	P	Y	G	E	D	G	T	I	Q	G	L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	T	L	H	R	Q	E	C	E	R	L	G	L	P	V
Template Known Secondary structure										T	T														T			B	S	S	S										B											T	T			B								T	T														S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H	I	E	Q	A	G	V	H	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																.	.														.																															.	.	.	.
Template Conservation																																.	.														.
Template Sequence		F	V	K	P	A	R	G	G	S	S	I	G	V	S	R	V	S	S	W	D	Q	L	P	A	A	V	A	R	A	R	.	.	R	H	D	P	K	V	I	V	E	A	A	I	S	.	G	R	E	L	E	C	G	V	L	E	M	P	D	G	T	L	E	A	S	T	L	G	E	I	R	V	A	G	V	R	G	R	E	D
Template Known Secondary structure						S	B		S	T	T	T	T						S	G	G	G										.	.	T	T		S	S									.												T	T	S														S	T	T		S
Template Predicted Secondary structure																																.	.														.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
											789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.					850	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																														.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																																														.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	.	.	.	.	V	P	F	V	S	K
Query Conservation		.	.	.	.	.	.	.	.	.																																																														.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																														.	.	.	.
Template Conservation
Template Sequence		S	F	Y	D	F	A	T	K	Y	L	D	D	A	A	E	L	D	V	P	A	K	V	D	D	Q	V	A	E	A	I	R	Q	L	A	I	R	A	F	A	A	I	D	C	R	G	L	A	R	V	D	F	F	L	T	D	D	G	P	V	I	N	E	I	N	T	M	P	G	F	T	T	I	S	M	Y	P	R	M	W	A
Template Known Secondary structure		S	S	S							T		T	T					S	S																						T	T			S										T	T									S	S				S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		856	.	.	.	860	.	.	.	.				.	.	.	.	.	870	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	T	G	V	P	L	A	K	V	.	.	.	A	A	R	V	M	A	G	K
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		A	S	G	V	D	Y	P	T	L	L	A	T	M	I	E	T	T	L	A	R
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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