Job Description P00968 Confidence 96.12% Date Thu Jan 5 10:57:25 GMT 2012 Rank 124 Aligned Residues 86 % Identity 12% Template c3l4bG_ PDB info PDB header:transport protein Chain: G: PDB Molecule:trka k+ channel protien tm1088b; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 3.45 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	E	G	Y	R	V	I	L	V	N	S	N	P	A	T	I	M	T	.	D	P	E	M	A	D	A	T	Y	I	E	P	I	H	W	E	V	V	R	K	I	I	E	K	E	R	P	D	A	V	L
Query Conservation																																																		.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	I	I	I	G	G	E	.	.	.	.	.	.	.	.	.	.	.	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.													T	T								S												S	S	S					S		T	T	S								T			T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.												10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	T	P	R	D	E	V	N	L	F	I	A	Q	L	V	M	K
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions