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Job DescriptionP00968
Confidence96.29%DateThu Jan 5 10:57:25 GMT 2012
Rank121Aligned Residues149
% Identity11%Templatec3ketA_
PDB info PDB header:transcription/dnaChain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  ADFLRQLKRKGF. . . ADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANP. . . STDR
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Template Sequence  YRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGEL. . . . . . . . . . . . . . GRRGFGYDVKKLMNFFAEILNDHST
Template Known Secondary structure  TT


TS
TT


..............SBTTTBTT
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   1920.........30.........40.........50......... 60.........70.........80....
 
   560.........570.........580....... ..590....... ..600.........610.........620.........630......
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Query Sequence  EKIMVLGGGPNRIGQGIEFDYCCVHASL. . ALREDGYETI. MVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPK
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Template Sequence  TNVMLVGCG. . NIGRAL. . . . . . . . . LHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVY. . . GISTINDHLIDSDIE
Template Known Secondary structure 

S...........TS
GGGTSS
TTSTTTTSB
TTS
B...GGGTSSS


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   85....90... ...... 100.........110.........120.........130..... ....140.........150
 
   637..640.........650.........660..
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Query Sequence  GVIVQYGGQTPLKLARALEAAGVPVI
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Template Sequence  TAILTVPSTEAQEVADILVKAGIKGI
Template Known Secondary structure 
S
GGGTT

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   151........160.........170......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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