Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 50 Aligned Residues 285 % Identity 21% Template c3k3pA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans Resolution 2.23 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580				.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.								.
Predicted Secondary structure																								.	.	.																																																.	.	.	.	.	.	.
Query SS confidence																								.	.	.																																																.	.	.	.	.	.	.
Query Sequence		R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	.	.	.	C	C	V	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	.	.	.	.	.	.	.	E
Query Conservation																								.	.	.																																																.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.									.	.	.																																																.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		K	E	T	L	V	L	L	Y	G	.	.	.	.	.	G	R	S	A	E	R	D	V	S	V	L	S	A	E	S	V	M	R	A	I	N	Y	D	N	F	L	V	K	T	Y	F	I	T	Q	A	G	D	F	I	K	T	Q	E	F	D	S	Q	P	S	D	K	L	M	T	N	D	T	I	I	A	S	Q	K	I	K	P
Template Known Secondary structure											.	.	.	.	.		S	S	T	T															S		T	T	T										T	T	S									S	S									T	T	S			G	G	G				G
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.		.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure																						.	.																																						.
Query SS confidence																						.	.																																						.
Query Sequence		I	V	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	.	K	L	K	Q	P	A	N	A	T	V	T	A	I	E	M	A	V	E	K	A
Query Conservation																						.	.																																						.
Alig confidence																						.	.																																						.
Template Conservation
Template Sequence		S	D	I	Y	E	E	E	A	V	V	F	P	V	L	H	G	P	M	G	E	D	G	S	I	Q	G	F	L	E	V	L	K	M	P	Y	V	G	T	N	I	L	S	S	S	V	A	M	D	K	I	T	T	N	Q	V	L	E	S	A	T	T	I	P	Q	V	A	Y	V	A	L	I	E	G	E	P	L	E	S	K	L
Template Known Secondary structure		G	G	G			T	T									S	T	T	T	S	S	S									T	T			B	S	S																											B								T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		706	.					.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		K	E	.	.	.	.	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.										.	.	.	.	.	.																								.	.											.																	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.																								.	.											.																	.	.	.	.	.	.	.
Template Sequence		A	E	V	E	E	K	L	I	Y	P	V	F	V	K	P	.	.	.	.	.	.	A	N	I	S	K	A	E	N	R	T	D	L	K	Q	A	I	A	L	A	L	K	Y	D	.	.	S	R	V	L	I	E	Q	G	V	D	.	A	R	E	I	E	V	G	I	L	G	N	T	D	V	K	T	.	.	.	.	.	.	.
Template Known Secondary structure										S	S						.	.	.	.	.	.							S	S																.	.	S										.	S										S	S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.																								.	.											.																	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.			.	.	.	.	.	.	850	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.											.	.
Query SS confidence																																																						.											.	.
Query Sequence		I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	.	.	P	R	A	A	R	T	V	P	F	V	S	K	A	T	G
Query Conservation																																																						.											.	.
Alig confidence		.	.	.	.	.																																																.											.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	T	L	P	G	E	I	V	T	M	A	I	P	A	E	I	D	P	V	I	V	E	K	M	R	D	Y	A	A	T	A	F	R	T	L	G	C	C	G	L	S	R	C	D	F	F	L	T	E	D	G	K	V	Y	L	N	E	L	N	T	M	P	G	F	T	S	M	Y	P	L	L	W	E	N	M	G
Template Known Secondary structure		.	.	.	.	.											S	S																						T	T													T	T										S	S														T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		859	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	L	A	K	V	A	A	R	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	Y	S	V	L	I	E	E	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions