Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 43 Aligned Residues 292 % Identity 15% Template c3e5nA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-d-alanine ligase a; PDBTitle: crystal strucutre of d-alanine-d-alanine ligase from2 xanthomonas oryzae pv. oryzae kacc10331 Resolution 2.00 Å

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		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.				.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.			600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620						.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.																	.	.																						.	.	.	.	.
Query SS confidence																											.	.	.																	.	.																						.	.	.	.	.
Query Sequence		R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	.	.	.	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	.	.	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	.	.	.	.	.	V	T	L	E	D	V	L	E
Query Conservation																											.	.	.																	.	.																						.	.	.	.	.
Alig confidence										.		.	.	.	.												.	.	.																	.	.																						.	.	.	.	.
Template Conservation										.		.	.	.	.
Template Sequence		K	I	R	V	G	L	I	F	.	G	.	.	.	.	G	K	S	A	E	H	E	V	S	L	Q	S	A	R	N	I	L	D	A	L	D	P	Q	R	F	E	P	V	L	I	G	I	D	K	Q	G	Q	W	H	V	N	D	P	D	S	F	L	L	H	A	D	D	P	A	R	I	A	L	H	R	S	G	R	G	V	A
Template Known Secondary structure										.		.	.	.	.		S	S	T	T															S		T	T	T										T	T	S							G	G	G	S			S	T	T		T	T	T
Template Predicted Secondary structure										.		.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10		.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.																.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	P	G	A	Q	Q	Q	Q	L	R	P	I	Q	Q	A	L	A	Q	I	D	V	V	F	P	I	V	H	G	T	L	G	E	D	G	S	L	Q	G	L	L	R	M	A	N	L	P	F	V	G	S	G	V	L	G	S	A	V	A	M	D	K	D	M	A	K	R	V	L	R	D	A	R	L	A	V	A	P	F	V
Template Known Secondary structure				T	T		S	S	S													S								S					S	S									T	T			B	S	S											B											T	T			B
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		694	.	.	.	.	.	700					.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		T	V	T	A	I	E	M	.	.	.	.	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																																										.	.															.
Template Conservation																																																						.	.															.
Template Sequence		C	F	D	R	H	T	A	A	H	A	D	V	D	T	L	I	A	Q	L	G	L	P	L	F	V	K	P	A	N	Q	G	S	S	V	G	V	S	Q	V	R	T	A	D	A	F	A	A	A	L	A	L	A	.	.	L	A	Y	D	H	K	V	L	V	E	A	A	V	A	.	G	R	E	I	E	C	A	V	L	G	N
Template Known Secondary structure									T	T												S	S						S	B	S		S	S	T	T						S	G	G	G									.	.	T	T	T		S										.	S										S
Template Predicted Secondary structure																																																						.	.															.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.
		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		G	E	M	V	L	I	G	G	I	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R
Query Conservation																																																																		.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	P	H	A	S	V	C	G	E	V	V	V	E	I	V	.	.	.	.	.	.	.	.	.	.	.	I	P	A	D	I	D	A	Q	T	Q	Q	R	I	Q	Q	I	A	V	Q	A	Y	Q	A	L	G	C	A	G	M	A	R	V	D	V	F	L	C	A	D	G	R	I	V	I	N	E	V	N	T	L	P	G	F
Template Known Secondary structure		S	S															.	.	.	.	.	.	.	.	.	.	.	S	S		S	S																				T			S										T	T										S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.												.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		849					850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		T	.	.	.	.	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	A	A	R	V	M
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.
Template Conservation
Template Sequence		T	R	I	S	V	Y	P	K	L	W	Q	A	S	G	L	D	Y	R	G	L	I	T	R	L	I
Template Known Secondary structure		S	T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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