Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 3 Aligned Residues 393 % Identity 22% Template c3bg5C_ PDB info PDB header:ligase Chain: C: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of staphylococcus aureus pyruvate2 carboxylase Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.										.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	K	S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	E	G	Y	R	V	I	L	V	N	S	N	P	A	T	I	M	T	D	P	E	M	A	D	A	T	Y	I	E	P	.	.	.	.	.	.	.	.	.	I	H	W	E	V	V	R	K
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	K	K	L	L	V	A	N	R	G	E	I	A	I	.	.	.	.	.	.	.	.	.	.	.	R	I	F	R	A	A	A	E	L	D	I	S	T	V	A	I	Y	S	N	E	D	K	S	S	L	H	R	Y	K	A	D	E	S	Y	L	V	G	S	D	L	G	P	A	E	S	Y	L	N	I	E	R	I	I	D
Template Known Secondary structure									S								.	.	.	.	.	.	.	.	.	.	.									T	T									S	T	T	T	T		G	G	G	G	S	S	S							S	S			S	S	S	T	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50												.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		I	I	E	K	E	R	P	D	A	V	L	P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q	G	V	L	E	E	F	G	V	T	M	I	G	A	T	A	D	A	I	D	K	A	E	D	R	R	R	F	D	V	A	M	K	K	I	G	L	E	T	A	R	.	.	S	G	I	A	H	T	M	E	E
Query Conservation																																																																							.	.
Alig confidence																	.	.	.												.	.																																							.	.
Template Conservation																	.	.	.												.	.
Template Sequence		V	A	K	Q	A	N	V	D	A	I	H	P	G	Y	G	.	.	.	F	L	S	E	N	E	Q	F	A	R	R	.	.	C	A	E	E	G	I	K	F	I	G	P	H	L	E	H	L	D	M	F	G	D	K	V	K	A	R	T	T	A	I	K	A	D	L	P	V	I	P	G	T	D	G	P	I	K	S	Y	E	L
Template Known Secondary structure					T	T	T								S	S	.	.	.	S	S	T	T								.	.				T	T				S	S	S									S	S											T	T			B					S	S				T	T
Template Predicted Secondary structure																	.	.	.												.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		A	L	A	V	A	A	D	V	G	F	P	C	I	I	R	P	S	F	T	M	G	G	S	G	G	G	I	A	Y	N	R	E	E	F	E	E	I	C	.	.	.	.	A	R	G	L	D	L	S	P	T	K	E	L	L	I	D	E	S	L	I	G	W	K	E	Y	E	M	E	V	V	R	D	K	N	D	N	C	I	I
Query Conservation																																								.	.	.	.
Alig confidence																																								.	.	.	.
Template Conservation
Template Sequence		A	K	E	F	A	E	E	A	G	F	P	L	M	I	K	A	T	S	G	G	G	G	K	G	M	R	I	V	R	E	E	S	E	L	E	D	A	F	H	R	A	K	S	E	A	E	K	S	F	G	N	S	E	V	Y	I	E	R	Y	I	D	N	P	K	H	I	E	V	Q	V	I	G	D	E	H	G	N	I	V	H
Template Known Secondary structure								S	S		S							S	S				G	G	G						S	T	T	T																S	S											S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	S	I	E	N	F	D	A	M	G	I	H	T	G	D	S	I	T	V	A	P	A	Q	T	L	T	D	K	E	Y	Q	I	M	R	N	A	S	M	A	V	L	R	E	I	G	V	E	T	G	G	S	N	V	Q	F	A	V	N	P	K	N	G	R	L	I	V	I	E	M	N	P	R	V	S	R	S	S	A	L
Query Conservation
Alig confidence				.	.																																													.											.	.
Template Conservation				.	.																																													.											.	.
Template Sequence		L	F	.	.	E	R	D	C	S	V	Q	R	R	H	Q	K	V	V	E	V	A	P	S	V	G	L	S	P	T	L	R	Q	R	I	C	D	A	A	I	Q	L	M	E	N	I	K	Y	V	.	N	A	G	T	V	E	F	L	V	S	.	.	G	D	E	F	F	F	I	E	V	N	P	R	V	Q	V	E	H	T	I
Template Known Secondary structure				.	.								S	S	S								S		S	S																				T	T			.											.	.	T	T										S			T	T
Template Predicted Secondary structure				.	.																																													.											.	.
Template SS confidence
		260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.																		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query Sequence		A	S	K	A	T	G	F	P	I	A	K	V	A	A	K	L	A	V	G	Y	T	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	M	N	D	I	T	G	G	R	T	P	A	S	F	E	P	S	I	D	Y	V	V	T	K	I	P	R	F	N	F	E	K	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		T	E	M	V	T	G	I	D	I	V	K	T	Q	I	L	V	A	A	G	A	D	L	F	G	E	E	I	N	M	P	Q	Q	K	D	I	T	T	L	G	Y	A	I	Q	C	R	I	T	T	E	D	P	L	N	D	F	M	P	D	T	G	.	.	.	.	T	I	I	A	Y	R	S	S	G	G	F	G	V	R	L	D
Template Known Secondary structure																				T			T	T	S	T	T	T					G	G	G					S									S			T	T	T	T	S						.	.	.	.			S								T	T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
				367	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure		.	.																.																										.
Query SS confidence		.	.																.																										.
Query Sequence		.	.	F	A	G	A	N	D	R	L	T	T	Q	M	K	S	V	.	G	E	V	M	A	I	G	R	T	Q	Q	E	S	L	Q	K	A	L	R	G	L	E	V	G	A	.	T	G	F	D	P	K	V	S	L	D	D	P	E	A	L	T	K	I	R	R	E	L	K	D	A
Query Conservation		.	.																.																										.
Alig confidence		.	.																.																										.										.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.
Template Sequence		A	G	D	G	F	Q	G	A	E	I	S	P	Y	Y	D	S	L	L	V	K	L	S	T	H	A	I	S	F	K	Q	A	E	E	K	M	V	R	S	L	R	E	M	R	I	R	G	V	K	T	N	I	P	F	.	.	.	.	.	.	.	.	L	I	N	V	M	K	N	K
Template Known Secondary structure			S	S		S	T	T					T	T	S												S	S																			S	S			S				.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.									.	.	.	.	.	.	.	.