Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 45 Aligned Residues 299 % Identity 17% Template c2zdqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of d-alanine:d-alanine ligase with atp2 and d-alanine:d-alanine from thermus thermophius hb8 Resolution 2.30 Å

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		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580				.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	.	.	.	C	C	V	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	E	K	P	K	G
Query Conservation																						.	.	.
Alig confidence									.	.	.	.	.									.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		R	V	L	L	I	A	G	.	.	.	.	.	G	V	S	P	E	H	E	V	S	L	L	S	A	E	G	V	L	R	H	I	P	F	P	T	D	L	A	V	I	A	Q	D	G	R	W	L	L	G	E	K	A	L	T	A	L	E	A	K	A	A	P	E	G	E	H	P	F	P	P	P	L	S	W	E	R	Y	D	V
Template Known Secondary structure									.	.	.	.	.		S	S	T	T																S	S									T	T	S					T									T	S						S	B		S	S					G	G	G		S
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.						.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		638	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	E	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R
Query Conservation													.	.
Alig confidence													.	.																																																					.	.	.
Template Conservation																																																																			.	.	.
Template Sequence		V	F	P	L	L	H	G	R	F	G	E	D	G	T	V	Q	G	F	L	E	L	L	G	K	P	Y	V	G	A	G	V	A	A	S	A	L	C	M	D	K	D	L	S	K	R	V	L	A	Q	A	G	V	P	V	V	P	W	V	A	V	R	K	G	E	P	.	.	.	P	V	V	P	F	D	P	P	F	F	V	K
Template Known Secondary structure								S	T	T	T	T	S	S										T			B	S	S																						T	T											T	T	S		.	.	.					S		S
Template Predicted Secondary structure																																																																			.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																													.	.																														.																			.	.	.
Template Conservation																													.	.																														.
Template Sequence		P	A	N	T	G	S	S	V	G	I	S	R	V	E	R	F	Q	D	L	E	A	A	L	A	L	A	F	.	.	R	Y	D	E	K	A	V	V	E	K	A	L	S	P	V	R	E	L	E	V	G	V	L	G	N	V	F	G	E	.	A	S	P	V	G	E	V	R	Y	E	A	P	F	Y	D	Y	E	T	K	Y	T
Template Known Secondary structure			T	T			T	T	T	T						S	G	G	G									T	.	.	T	T		S									S	S										S	S	S	S			.										S	S	S	S	S							S
Template Predicted Secondary structure																													.	.																														.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
					793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.					.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.
Predicted Secondary structure		.	.	.																																																								.	.	.	.																		.
Query SS confidence		.	.	.																																																								.	.	.	.																		.
Query Sequence		.	.	.	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	.	.	.	.	R	T	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	.
Query Conservation		.	.	.																																																								.	.	.	.																		.
Alig confidence		.	.	.																																																								.	.	.	.																		.
Template Conservation
Template Sequence		P	G	R	A	E	L	L	I	P	A	P	L	D	P	G	T	Q	E	T	V	Q	E	L	A	L	K	A	Y	K	V	L	G	V	R	G	M	A	R	V	D	F	F	L	A	E	G	E	L	Y	L	N	E	L	N	T	I	P	G	F	T	P	T	S	M	Y	P	R	L	F	E	A	G	G	V	A	Y	P	E	L	L
Template Known Secondary structure		T	T	S	S				S	S																							T			S										T	T									S	S				S	T	T		S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
				865	.	.	.	.	870
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	A	A	R	V	M	A
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		R	R	L	V	E	L	A	L
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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