Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 21 Aligned Residues 358 % Identity 17% Template c2yyaB_ PDB info PDB header:ligase Chain: B: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of gar synthetase from aquifex aeolicus Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.			.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	H	A	S	L	A	L	R	E	.	.	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	E	K	P	K	G	V
Query Conservation																																	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.										.	.																.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Sequence		K	V	L	V	V	G	N	G	G	R	E	.	.	.	.	.	.	.	.	.	.	.	H	A	I	A	W	K	V	A	Q	S	P	L	V	K	E	L	Y	V	A	K	G	N	A	G	I	W	.	.	.	.	E	I	A	K	R	V	D	I	S	P	T	D	V	E	K	L	A	E	F	A	K	N	E	G	V	D	F	T
Template Known Secondary structure									S				.	.	.	.	.	.	.	.	.	.	.								T	T	S	T	T		S						S			T	T	G	G	.	.	.	.	G	T	S					S		T	T													T		S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.												.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	Q	Y	G	G	Q	T	P	L	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	E	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	G	P	E	A	P	L	V	E	G	I	V	D	E	F	E	K	R	G	L	K	I	F	G	P	N	K	E	A	A	K	L	E	G	S	K	A	F	A	K	T	F	M	K	K	Y	G	I	P	T	A	R	Y	E	V	F	T	D	F	E	K	A	K	E	Y	V	E	K	V	G	A	P	I	V	V	K	A	D	G
Template Known Secondary structure					S	S					T	T								T	T					S			T	T	T	T																	T			B							S										T	T	T		S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.					.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.						.	.	.	.
Predicted Secondary structure																															.	.	.	.																																							.	.	.	.	.
Query SS confidence																															.	.	.	.																																							.	.	.	.	.
Query Sequence		V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	.	.	.	.	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H	I	E	Q	A	.	.	.	.	.	G	V	H	S
Query Conservation																															.	.	.	.																																							.	.	.	.	.
Alig confidence																															.	.	.	.											.																												.	.	.	.	.
Template Conservation																																													.
Template Sequence		L	A	A	G	K	G	A	V	V	C	E	T	V	E	K	A	I	E	T	L	D	R	F	L	N	K	K	I	F	G	K	S	S	E	R	V	V	I	E	E	F	L	E	.	G	E	E	A	S	Y	I	V	M	I	N	G	D	R	Y	V	P	L	P	T	S	Q	D	H	K	R	L	L	D	E	D	K	G	P	N	T
Template Known Secondary structure			S	T	T								S													T	S			S	T	T	T	S	S	S									.												T	T								B								T	T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.					.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.			.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.		.	.	.	.	.	.	.	.	860	.	.
Predicted Secondary structure																	.	.	.	.																		.	.																															.
Query SS confidence																	.	.	.	.																		.	.																															.
Query Sequence		G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	.	.	.	.	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	.	.	V	R	G	L	M	N	V	Q	F	A	V	K	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	V	P	.	F	V	S	K	A	T	G	V	P	L	A
Query Conservation																	.	.	.	.																		.	.																															.
Alig confidence																	.	.	.	.																		.	.																															.
Template Conservation
Template Sequence		G	G	M	G	A	Y	S	P	T	P	V	I	N	E	E	V	E	K	R	I	R	E	E	I	V	E	R	V	I	K	G	L	K	E	E	G	I	Y	Y	R	G	F	L	Y	A	G	L	M	I	T	K	E	G	P	K	V	L	E	F	N	V	R	L	G	D	P	E	A	Q	P	I	L	M	R	V	K	N	D	F	L
Template Known Secondary structure		S		S					S		T	T	S												T											T	T															T	T									S	S			T	T	T							T	B		S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		863	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.																						900	.	.	.	.	.	.	.	.	.	910	.	.	.	.				.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		K	V	A	A	R	V	M	A	G	K	S	L	A	E	Q	G	V	T	K	E	V	I	P	P	Y	Y	S	V	K	E	V	V	L	P	F	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	G	V	D	P	L	L	G	P	E	M	R	S	T	.	.	.	G	E	V	M
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence																		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																		.	.
Template Sequence		E	T	L	L	N	F	Y	E	G	K	D	V	H	I	K	E	.	.	D	E	R	Y	A	L	D	V	V	L	A	S	R	G	Y	P	E	K	P	E	T	G	K	I	I	H	G	L	D	Y	L	K	S	M	E	D	V	V	V	F	H	A	G	T	K	K	E	G	N	F	T	V	T	S	G	G	R	V	L	N	V	C
Template Known Secondary structure										T							B	.	.		S	S										T	T	T	T	T	S						B		B		T	T	T	G	G	G	S	T	T						S	S					T	T						S	S
Template Predicted Secondary structure																		.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	G	R	T	F	A	E	A	F	A	K	A	Q	L	G	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	G	K	T	L	K	E	A	K	E	R	A	Y	E	A	I	R
Template Known Secondary structure					S	S													T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions