Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 42 Aligned Residues 291 % Identity 20% Template c2pvpB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: crystal structure of d-alanine-d-alanine ligase from helicobacter2 pylori Resolution 2.40 Å

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		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.				.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	.	.	.	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	E	K	P	K
Query Conservation																										.	.	.
Alig confidence									.	.	.	.	.	.												.	.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		E	F	C	V	L	F	G	.	.	.	.	.	.	G	A	S	F	E	H	E	I	S	I	V	S	A	I	A	L	K	G	V	L	K	D	R	I	K	Y	F	I	F	L	D	E	N	H	H	F	Y	L	I	E	E	S	N	M	H	S	K	Y	F	A	Q	I	K	E	K	K	L	P	P	L	I	L	T	H	N	G	L
Template Known Secondary structure									.	.	.	.	.	.		S	S	T	T																G	G	G									T	T								G	G	G		S						T	G	G	G	G					B				T	T
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.							.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		637	.	.	640	.	.	.	.	.	.	.	.	.																	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	I	V	Q	Y	G	G	Q	T	P	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	E	M
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	N	S	F	L	G	A	K	I	I	E	L	P	L	V	I	N	L	V	H	G	G	D	G	E	D	G	K	L	A	S	L	L	E	F	Y	R	I	A	F	I	G	P	R	I	E	A	S	V	L	S	Y	N	K	Y	L	T	K	L	Y	A	K	D	L	G	I	K	T	L	D	Y	V	L	L	N	E	K	N	R
Template Known Secondary structure						T	T									S							S					S	S									T	T					S											S											T	T		B									T	T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		701	.	.	.		.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		A	V	E	K	.	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M
Query Conservation						.
Alig confidence						.																																							.	.
Template Conservation																																													.	.
Template Sequence		A	N	A	L	D	L	M	N	F	N	F	P	F	I	V	K	P	S	N	A	G	S	S	L	G	V	N	V	V	K	E	E	K	E	L	I	Y	A	L	D	S	A	F	.	.	E	Y	S	K	E	V	L	I	E	P	F	I	Q	G	V	K	E	Y	N	L	A	G	C	K	I	K	K	D	F	C	F	S	Y	I	E
Template Known Secondary structure						T	T					S							S	S		S	T	T	T	T						S	T												.	.	T	T		S									T	T												T	T								B
Template Predicted Secondary structure																																													.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	V	P	F	V	S	K	A	T	G	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	N	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	P	K	A	S	L	S	N	A	L	E	E	Q	L	K	E	N	F	K	K	L	Y	S	D	L	F	D	G	A	I	I	R	C	D	F	F	V	I	E	N	E	V	Y	L	N	E	I	N	P	I	P	G	S	L	A	N	Y	L	F	D	D	F	K	T
Template Known Secondary structure			T	T			.	.	.	.	.	.	.	.	.	.	.	.																						T	T	T	T	T	T											T	T									S	S		G	G	G	G	G	G	G	S	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.													.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		860	.	.	.	.	.	.	.	.	.	870
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	K	V	A	A	R	V	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	E	N	L	A	Q	S	L	P	K
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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