Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 19 Aligned Residues 360 % Identity 18% Template c2ip4A_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of glycinamide ribonucleotide synthetase from2 thermus thermophilus hb8 Resolution 2.80 Å

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		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.			.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	H	A	S	L	A	L	R	E	.	.	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	E	K	P	K	G
Query Conservation																																		.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.										.	.													.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Sequence		X	K	V	L	V	V	G	S	G	G	R	E	.	.	.	.	.	.	.	.	.	.	.	H	A	L	L	W	K	A	A	Q	S	P	R	V	K	R	L	Y	A	A	P	G	N	A	.	.	.	.	.	G	X	E	A	L	A	E	L	V	P	W	N	G	D	V	E	A	L	A	D	W	A	L	A	E	G	I	D	L
Template Known Secondary structure									S	S				.	.	.	.	.	.	.	.	.	.	.									T		S	S											T	.	.	.	.	.	T	G	G	G	T	S							S													T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.												.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	V	Q	Y	G	G	Q	T	P	L	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	E	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	V	G	P	E	A	P	L	V	E	G	I	A	D	A	F	Q	A	R	G	L	L	L	F	G	P	T	Q	K	A	A	X	I	E	G	S	K	A	F	A	K	G	L	X	E	R	Y	G	I	P	T	A	R	Y	R	V	F	R	E	P	L	E	A	L	A	Y	L	E	E	V	G	V	P	V	V	V	K	D	S
Template Known Secondary structure						S	S					T	T									T					S																						T				B							S	S													S	S						T
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.						.	.	.	.	790	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H	I	E	Q	A	.	.	.	.	.	G	V	H	S	G	D	S
Query Conservation																																																																						.	.	.	.	.
Alig confidence																																										.																												.	.	.	.	.
Template Conservation																																										.
Template Sequence		G	L	A	A	G	K	G	V	T	V	A	F	D	L	H	Q	A	K	Q	A	V	A	N	I	L	N	R	A	E	G	G	E	V	V	V	E	E	Y	L	E	.	G	E	E	A	T	V	L	A	L	T	D	G	E	T	I	L	P	L	L	P	S	Q	D	H	K	R	L	L	D	G	D	Q	G	P	X	T	G	G	X
Template Known Secondary structure		T	S		S	S	T	T					S													T	T	S	S	S												.	S										S	S	S								B								T	T	T						S		S
Template Predicted Secondary structure																																										.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.						820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.		850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																															.
Query SS confidence																													.	.	.	.	.																															.
Query Sequence		A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	.	.	.	.	.	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	.	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	A	A
Query Conservation																													.	.	.	.	.																															.
Alig confidence																													.	.	.	.	.																															.
Template Conservation
Template Sequence		G	A	V	A	P	Y	P	X	D	E	A	T	L	R	R	V	E	E	E	I	L	G	P	L	V	R	G	L	R	A	E	G	V	V	Y	R	G	V	V	Y	A	G	L	X	L	T	R	E	G	P	K	V	L	E	F	N	A	R	F	G	D	P	E	A	Q	A	L	L	P	L	L	E	N	D	L	V	E	L	A	L
Template Known Secondary structure						S															T											T	T															S	S									S	S			T	T						T	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		867	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.																			.	.	910	.	.	.	.	.	.				.	.	.	920	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		R	V	M	A	G	K	S	L	A	E	Q	G	V	T	K	E	V	I	P	P	Y	Y	S	V	K	E	V	V	L	P	F	N	K	F	P	G	V	D	P	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	E	M	R	S	T	G	E	.	.	.	V	M	G	V	G	R	T	F	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation
Template Sequence		R	V	A	E	G	R	L	A	G	T	R	L	S	W	K	E	G	A	A	A	C	V	V	L	A	A	P	G	Y	P	E	S	P	R	K	G	I	P	L	H	V	P	E	P	P	E	G	V	L	V	F	H	A	G	T	R	R	E	G	G	R	L	V	S	A	G	G	R	V	L	N	V	V	G	L	G	R	D	L	K
Template Known Secondary structure						T		G	G	G					B		S	S										T	T	T	T	T	S						B		B						T	T						S	S				S	S	S	S					S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		926	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	F	A	K	A	Q	L	G	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	L	E	R	A	Y	A	Y	I	P
Template Known Secondary structure											G	G
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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