Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 37 Aligned Residues 297 % Identity 17% Template c2i80B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies Resolution 2.19 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.				.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.								.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.					.
Predicted Secondary structure																											.	.	.																						.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																											.	.	.																						.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	.	.	.	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	.	.	.	.	.	.	.	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	.	.	.	.	E
Query Conservation																											.	.	.																						.	.	.	.	.	.	.																				.	.	.	.
Alig confidence											.	.	.	.	.												.	.	.																						.	.	.	.	.	.	.																				.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		K	E	N	I	C	I	V	F	G	.	.	.	.	.	G	K	S	A	E	H	E	V	S	I	L	T	A	Q	N	V	L	N	A	I	D	K	D	K	Y	H	V	D	I	I	Y	I	T	N	D	G	D	W	R	K	Q	N	N	I	T	A	E	I	K	S	T	D	E	L	H	L	E	N	G	E	A	L	E	I	S	Q
Template Known Secondary structure											.	.	.	.	.		S	S	T	T															S		T	T	T										T	T	S										S					G	G	G	G	S		S					S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																										.	.																																																	.	.	.	.	.	.
Query SS confidence																										.	.																																																	.	.	.	.	.	.
Query Sequence		D	V	L	E	I	V	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	.	.	.	.	.	.
Query Conservation																										.	.																																																	.	.	.	.	.	.
Alig confidence																										.	.																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	K	E	S	S	S	G	Q	P	Y	D	A	V	F	P	L	L	H	G	P	N	G	E	D	G	T	I	Q	G	L	F	E	V	L	D	V	P	Y	V	G	N	G	V	L	S	A	A	S	S	M	D	K	L	V	M	K	Q	L	F	E	H	R	G	L	P	Q	L	P	Y	I	S	F	L	R	S	E	Y	E	K
Template Known Secondary structure							T	T	S	S			S						S		B	T	T	T	B	S	S										T			B	S	S																							T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
			697	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	I	E	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I
Query Conservation		.
Alig confidence		.																																																	.	.												.
Template Conservation																																																			.	.												.
Template Sequence		Y	E	H	N	I	L	K	L	V	N	D	K	L	N	Y	P	V	F	V	K	P	A	N	L	G	S	S	V	G	I	S	K	C	N	N	E	A	E	L	K	E	G	I	K	E	A	F	Q	F	.	.	D	R	K	L	V	I	E	Q	G	V	N	.	A	R	E	I	E	V	A	V	L	G	N	D	Y	P	E	A	T
Template Known Secondary structure																S	S						T	T		S	S		T	T					S	S													T	T	.	.		S										.											S	S	S
Template Predicted Secondary structure																																																			.	.												.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		776	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.					850
Predicted Secondary structure																																																												.																	.	.	.	.
Query SS confidence																																																												.																	.	.	.	.
Query Sequence		G	G	I	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	.	.	.	.	V
Query Conservation																																																												.																	.	.	.	.
Alig confidence								.	.	.	.	.	.																																															.																	.	.	.	.
Template Conservation								.	.	.	.	.	.
Template Sequence		W	P	G	E	V	V	.	.	.	.	.	.	K	D	V	A	F	V	Q	L	Q	I	P	A	D	L	D	E	D	V	Q	L	T	L	R	N	M	A	L	E	A	F	K	A	T	D	C	S	G	L	V	R	A	D	F	F	V	T	E	D	N	Q	I	Y	I	N	E	T	N	A	M	P	G	F	T	A	F	S	M	Y
Template Known Secondary structure								.	.	.	.	.	.		S	S							S	S		S																				T	T													T	T										S	S				S	T	T	S
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240							.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	V	S	K	A	T	G	V	P	L	A	K	V	A	A	R	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	K	L	W	E	N	M	G	L	S	Y	P	E	L	I	T	K	L	I
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions