 |
Job Description | P00968 | Confidence | 92.86% | Date | Thu Jan 5 10:57:25 GMT 2012 |
Rank | 270 | Aligned Residues | 94 |
% Identity | 23% | Template | c2duwA_ |
PDB info |
PDB header:ligand binding protein | Chain: A: PDB Molecule:putative coa-binding protein; |
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
|
Resolution | UNK |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | |
|
|
|
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | |
|
. | . | . | . | . | 70 |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |
|
|  |  | . | . |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
Query Sequence |   |
K | S | I | L | I | L | G | A | . |
. |
. |
. |
G | P | I | V | I | G | Q | A | C | E | F | D | Y | S | G | A | Q | A | C | K | A | L | R | E | E | G | Y | R | V | I | L | V | N | S | N | P | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | I | M | T | D | P | E | M | A | D | A | T | . |
. |
Y | I | E | P | I | H |
Query Conservation |   |
|
|
|
|
|
|
|
| . | . | . | . |
|   |
|   |
|
|   |
|   |
|
|
|   |
|
|   |
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|
|   |   |
|
|   | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|   |   |   |   |
|
|   |   | . | . |
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . |
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|
|
|
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |
|   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|   |   |   |   |   |   |
|   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|
|   |   |   |
Template Sequence |   |
R | T | I | A | L | V | G | A | S | D | K | P | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | P | S | Y | R | V | M | K | Y | L | L | D | Q | G | Y | H | V | I | P | V | S | P | K | V | A | G | K | T | L | L | G | Q | Q | G | Y | A | T | L | A | D | V | P | E | K | V | D | M | V | D | V | F | R | N | S | E | A |
Template Known Secondary structure |   |
|
|  |  |  |  | S |
|
| S |
| T | T | . | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
| S | S | S | T | T | S |  |  | T | T |  |  |
|
| S | S | T | T | T |
| S | S |
|
| S |  |  |  |
|
| S |
| S | T |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |
|
|  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | E | V | V | R | K | I | I | E | K | E | R | P | D | A | V | L | P | T | M | G | G | Q | T | A | L | N | C | A | L | E | L | E | R | Q | G | V | L | E | E | F | G | V | T | M | I | G | A | T |
Query Conservation |   |
  |
|   |
|   |   |
|
|   |   |
|   |
|
|
|
|
|
|   |   |
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |
|
|
|   |   |   |
|
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |
| . | . | . | . | . |   |   |   |   |
|   |   |   |   | . | . |
|   |   |   |
|
|   |
|
|
|
|
|
Template Sequence |   |
A | W | G | V | A | Q | E | A | I | A | I | G | A | K | T | L | W | L | Q | L | G | . |
. |
. |
. |
. |
V | I | N | E | Q | A | A | V | L | . |
. |
A | R | E | A | G | L | S | V | V | M | D | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |
|
| T | T | . | . | . | . | . |
|
|
|  |  |  |  |  |  | . | . |  |  | T | T | T |
|  |  |  |
| S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . | . | . |
|
|
|  |  |  |  |  |  | . | . |  |  |  |
|
|
|  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 110 | . | . | |
|
. | . | . | . | . | . | . | 120 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|