Job Description P00968 Confidence 93.08% Date Thu Jan 5 10:57:25 GMT 2012 Rank 254 Aligned Residues 157 % Identity 19% Template c2dt5A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8 Resolution 2.16 Å

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		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		I	E	E	L	V	R	L	E	E	K	V	A	E	V	G	I	T	G	L	N	A	D	F	L	R	Q	L	K	R	K	G	F	A	D	A	R	L	A	K	L	A	G	V	R	E	A	E	I	R	K	L	R	D	Q	Y	D	L	H	P	V	Y	K	R	V	D	T	C	A	A	E	F	A	T	D	T	A	Y	M	Y	.
Query Conservation																																																																																	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	R	L	I	T	Y	L	R	I	L	E	E	.	.	.	.	.	.	.	.	.	.	L	E	A	Q	G	V	H	R	T	S	S	E	Q	L	G	G	L	A	Q	V	T	A	F	Q	V	R	K	D	L	S	Y	F	G	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	R	G	V	G	Y	T
Template Known Secondary structure															.	.	.	.	.	.	.	.	.	.				T	T														T	S												T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20											.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.															.	.	.	.	60	.	.	.
				545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.		.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure		.	.																																																						.
Query SS confidence		.	.																																																						.
Query Sequence		.	.	S	T	Y	E	E	E	C	E	A	N	P	S	T	D	R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	Y	C	C	V	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	.	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V
Query Conservation		.	.																																																						.
Alig confidence		.	.																									.	.	.	.	.	.	.	.	.	.																				.												.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		V	P	V	L	K	R	E	L	R	H	I	L	G	L	N	R	K	W	G	L	C	I	V	G	M	G	.	.	.	.	.	.	.	.	.	.	R	L	G	S	A	L	A	D	Y	P	G	F	G	E	S	F	E	L	R	G	F	F	D	V	D	P	E	K	V	G	R	.	.	P	V	R	G	G	V	I	E	H	V	D
Template Known Secondary structure														T	T	T	S										S	.	.	.	.	.	.	.	.	.	.										S				S	S									S		T	T	T	T	T		.	.			T	T						G	G
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.											90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	E	D	V	L	E	I	V	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	K	L	A	R	A	L	E	A	A	G	V	P	V	I
Query Conservation
Alig confidence									.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		L	L	P	Q	R	V	P	.	.	.	.	G	R	I	E	I	A	L	L	T	V	P	R	E	A	A	Q	K	A	A	D	L	L	V	A	A	G	I	K	G	I
Template Known Secondary structure		G					S	T	.	.	.	.	T	T								S																T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions