Job Description P00968 Confidence 99.96% Date Thu Jan 5 10:57:25 GMT 2012 Rank 61 Aligned Residues 240 % Identity 19% Template c1uc8B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:lysine biosynthesis enzyme; PDBTitle: crystal structure of a lysine biosynthesis enzyme, lysx,2 from thermus thermophilus hb8 Resolution 2.00 Å

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		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.		.	650	.	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		F	D	Y	C	C	V	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	K	L	A	R	A	L	E	A
Query Conservation																																																																									.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	P	D	E	R	M	L	F	E	R	A	E	A	L	G	L	P	Y	K	K	V	Y	V	P	A	L	P	M	V	L	G	E	R	P	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	G	V	T	V	A	L	E	R	C	V	S	Q	S	R	G	L	A	A	A	R	Y	L	T	A
Template Known Secondary structure																	T								G	G	G				B	T	T	B			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T									S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	E	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R
Query Conservation
Alig confidence										.																																																																					.	.	.
Template Conservation										.																																																																					.	.	.
Template Sequence		L	G	I	P	V	V	N	R	.	P	E	V	I	E	A	C	G	D	K	W	A	T	S	V	A	L	A	K	A	G	L	P	Q	P	K	T	A	L	A	T	D	R	E	E	A	L	R	L	M	E	A	F	G	Y	P	V	V	L	K	P	V	I	X	X	X	X	X	X	X	X	X	X	X	X	G	F	Q	.	.	.
Template Known Secondary structure		T	T					S		.																				T	T										S	S													S	S									B		S										T	T	.	.	.
Template Predicted Secondary structure										.																																																																					.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.												.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.												.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	H	Q	L	F	Y	I	Q	E	Y	V	E	.	K	P	G	R	D	I	R	V	F	V	V	G	E	R	A	I	A	A	I	Y	R	A	E	N	C	P	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	V	A	R	L	S	V	K	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T	T										.		S	S									T	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.												.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
												163	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																					.	.	.	.	.	.	.	.	210	.
		817	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	A	A	R	V	M	A	G	K
Query Conservation
Alig confidence								.																												.	.
Template Conservation								.																												.	.
Template Sequence		A	E	A	V	G	G	.	G	V	V	A	V	D	L	F	E	S	E	R	G	L	L	V	N	E	V	N	H	T	M	E	F	K	N	.	.	S	V	H	T	T	G	V	D	I	P	G	E	I	L	K	Y	A	W	S	L
Template Known Secondary structure					T	T		.	S										T	T									T	T				T	T	.	.																				T
Template Predicted Secondary structure								.																												.	.
Template SS confidence
		226	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions