Job Description P00968 Confidence 99.89% Date Thu Jan 5 10:57:25 GMT 2012 Rank 69 Aligned Residues 225 % Identity 17% Template c1pk8D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp Resolution 2.10 Å

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		634	.	.	.	.	.	640							.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.					.	700	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																											.	.	.	.
Query SS confidence									.	.	.	.	.	.																																																											.	.	.	.
Query Sequence		K	P	K	G	V	I	V	.	.	.	.	.	.	Q	Y	G	G	Q	T	P	L	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	.	.	.	.	E	M	A	V	E
Query Conservation									.	.	.	.	.	.																																																											.	.	.	.
Alig confidence									.	.	.	.	.	.																									.																																		.	.	.	.
Template Conservation																																							.
Template Sequence		K	P	D	F	V	L	I	R	Q	H	A	F	S	M	A	R	N	G	D	Y	R	S	L	V	I	G	L	Q	Y	A	G	I	P	S	V	N	S	.	L	H	S	V	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	R	L	H	K	K	L	G	T	E	E	F	P	L	I	D	Q	T	F	Y	P	N	H	K	E
Template Known Secondary structure				S						S		S			S	S	T	T													T	T					S		.							T	S	S																	T	T	T			B							S	S	G	G	G
Template Predicted Secondary structure																																							.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E	H	I	E
Query Conservation
Alig confidence																																												.	.																					.	.
Template Conservation																																												.	.																					.	.
Template Sequence		M	L	S	S	T	T	Y	P	V	V	V	K	M	G	H	A	H	S	G	M	G	K	V	K	V	D	N	Q	H	D	F	Q	D	I	A	S	V	V	A	L	T	K	.	.	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	V	R	V	Q	K	I	.	.	G	Q	N	Y	K	A	Y	M	R	T	S	V	S	G
Template Known Secondary structure						S	S	S	S						S	S			T	T	T	T						S															T	.	.	S																				.	.	T	T										S	S	S
Template Predicted Secondary structure																																												.	.																					.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	V	P	F	V	S	K	A	T	G	V	P	L	A
Query Conservation																																																				.
Alig confidence																			.	.	.	.	.	.																												.
Template Conservation																			.	.	.	.	.	.
Template Sequence		N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	T	C	S	E	I	F	G	G	L	D	I	C	A	V	E	A	L	H	G	K	D	G	R	D	H	I	I	E	V	V	G	S	S	M	P	L	I	G	D	H	Q	D	E	D	K	Q	L	I	V
Template Known Secondary structure			S	S	T	T	S	S	S										.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T					S	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350							.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		863	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	A	A	R	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	V	V	N	K	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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