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Job DescriptionP00968
Confidence100.00%DateThu Jan 5 10:57:25 GMT 2012
Rank1Aligned Residues1059
% Identity100%Templatec1m6vE_
PDB info PDB header:ligaseChain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK
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Template Sequence  MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEK
Template Known Secondary structure 



SS




S
BTTB
TTT

S
SS
GGG
GGG
S




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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
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Template Sequence  ERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
Template Known Secondary structure 

S
SSSTTTT

SS
ST



SSS
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM
Query Conservation   








    

 

 

 
 


  
   
   
    




 
 
 







 
  

 
 
   
  

 
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Template Sequence  DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM
Template Known Secondary structure 
SSTT

TTTT
SS
TT



TTS
TT

SS
T
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIA
Query Conservation 


 



 



 

 
     

  
 

 
 


  
  



 

   
  
























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Template Sequence  GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIA
Template Known Secondary structure  TS
GGGS
S

S

T

STTTTSS

S

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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  KVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALR
Query Conservation   
 



 
  
 

 
  
   
 
 


  





 
   
 

      

  


 



 


 




 

 
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Template Sequence  KVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALR
Template Known Secondary structure  TTT

GGGSB
GGGTTSSBS
S

B
SS

GGG
TT


B

SS



SST
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   321........330.........340.........350.........360.........370.........380.........390.........400
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  GLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG
Query Conservation 
                          
  
   
      
   
         
 

  

     
           
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Template Conservation 
                          
  
   
      
   
         
 

  

     
           
Template Sequence  GLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG
Template Known Secondary structure  TS
SS
SSS

SS
TT
TTS
BTTTT




T
Template Predicted Secondary structure 
































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   401........410.........420.........430.........440.........450.........460.........470.........480
 
   481........490.........500.........510.........520.........530.........540.........550.........560
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Query Sequence  ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDRE
Query Conservation          
  

  



  

         
   
    
 
  
 

  
 

   
 
 
 

    
        
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Template Conservation          
  

  



  

         
   
    
 
  
 

  
 

   
 
 
 

    
        
Template Sequence  ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDRE
Template Known Secondary structure  GGG

TT

TS
TT




SBTTSS




SSS






SSS
Template Predicted Secondary structure 










































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   481........490.........500.........510.........520.........530.........540.........550.........560
 
   561........570.........580.........590.........600.........610.........620.........630.........640
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Query Sequence  KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIV
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Template Sequence  KIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIV
Template Known Secondary structure 


S
BTTB
TT


TTSGGGSGGGSS


S

S
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   561........570.........580.........590.........600.........610.........620.........630.........640
 
   641........650.........660.........670.........680.........690.........700.........710.........720
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Query Sequence  QYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL
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...
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Template Sequence  QYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPS. . .
Template Known Secondary structure  SSS
TTTT

B
SS

TT





SS
SS

...
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...
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   641........650.........660.........670.........680.........690.........700.........710.......
 
   721........730.........740.........750.........760.........770.........780.........790.........800
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Query Sequence  GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT
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Template Sequence  . . . AMEIVYDEADLRRYFQTA. . . . . . . . VLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYT
Template Known Secondary structure  ...


S
........


TT

SS
TTS
GGG

S
SS
Template Predicted Secondary structure  ...





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   724.....730.........740. ........750.........760.........770.........780.........790..
 
   801........810.........820.........830.........840.........850.........860.........870.........880
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Query Sequence  LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT
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Template Sequence  LSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVT
Template Known Secondary structure 

T

TT
S

TTS

T

T

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   801........810.........820.........830.........840.........850.........860.........870.........880
 
   881........890.........900.........910.........920.........930.........940.........950.........960
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Query Sequence  KEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL
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Template Sequence  KEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL
Template Known Secondary structure  S



SS

GGG
TTS




SS



SSTT



SSS

GGGGTT
Template Predicted Secondary structure 







































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   881........890.........900.........910.........920.........930.........940.........950.........960
 
   961........970.........980.........990.........1000.........1010.........1020.........1030.........1040
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Query Sequence  AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHY
Query Conservation     
   
    

 

   
   

    
                  
  


              

 
       
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Template Conservation 
      
    

 

   
   

    
             
    
  


              

 
     
 
Template Sequence  AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHY
Template Known Secondary structure  T
TT


B
TTT
SSBTT

S


STT

Template Predicted Secondary structure 































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   961........970.........980.........990.........1000.........1010.........1020.........1030.........1040
 
   1041........1050.........1060.........1070...
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Query Sequence  DTTLNGGFATAMALNADATEKVISVQEMHAQIK
Query Conservation   
    
                          
Alig confidence 
































Template Conservation   
    
                          
Template Sequence  DTTLNGGFATAMALNADATEKVISVQEMHAQIK
Template Known Secondary structure  SSTT

TTS





Template Predicted Secondary structure 










Template SS confidence 
































   1041........1050.........1060.........1070...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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