Job Description P00968 Confidence 99.91% Date Thu Jan 5 10:57:25 GMT 2012 Rank 67 Aligned Residues 228 % Identity 14% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		631	.	.	.	.	.	.	.	.	640	.							.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.					.	700
Predicted Secondary structure													.	.	.	.	.	.																																																										.	.	.	.
Query SS confidence													.	.	.	.	.	.																																																										.	.	.	.
Query Sequence		R	I	E	K	P	K	G	V	I	V	Q	.	.	.	.	.	.	Y	G	G	Q	T	P	L	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I	.	.	.	.	E	M
Query Conservation													.	.	.	.	.	.																																																										.	.	.	.
Alig confidence													.	.	.	.	.	.																							.																																			.	.	.	.
Template Conservation																																									.
Template Sequence		R	S	F	R	P	D	F	V	L	I	R	Q	H	A	F	G	M	A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	N	.	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N
Template Known Secondary structure							S						S					S	S	T	T													T	T					S	.								T	S	S																	T	T	T	S		B							S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I	M	E
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		H	R	E	M	L	T	L	P	T	F	P	V	V	V	K	I	G	H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	Q	T	Y	.	.	A	T	A	E	P	F	I	D	A	K	Y	D	I	R	V	Q	K	I	G	N	N	Y	K	A	Y	M	R	T	S	I	S
Template Known Secondary structure		G	G	G	G	S	S				S	S						S	S		S	T	T	T	T						S															T			.	.																			T	T									S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		781	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	V	P	F	V	S	K	A	T	G	V
Query Conservation																																																							.
Alig confidence																				.	.	.	.	.	.	.	.																												.
Template Conservation																				.	.	.	.	.	.	.	.
Template Sequence		G	N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	.	.	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D	C	S	M	P	L	I	G	E	H	Q	V	E	D	R	Q
Template Known Secondary structure		T	T	T	S		S				S	S								.	.	.	.	.	.	.	.											T	T	G	G	G			S										T	T	S										T	T					S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.									.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	K	V	A	A	R	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	T	D	L	V	I	S	K	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions