Job Description P00968 Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012 Rank 34 Aligned Residues 294 % Identity 17% Template c1ehiB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides Resolution 2.38 Å

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		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.				580	.	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
Predicted Secondary structure																								.	.	.															.																																	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.															.																																	.	.	.	.	.	.	.	.
Query Sequence		D	R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	.	.	.	Y	C	C	V	H	A	S	L	A	L	R	E	D	G	.	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.															.																																	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.								.	.	.															.																																	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence		T	K	K	R	V	A	L	I	F	G	.	.	.	.	.	G	N	S	S	E	H	D	V	S	K	R	S	A	Q	N	F	Y	N	A	I	E	A	T	G	K	Y	E	I	I	V	F	A	I	A	Q	N	G	F	F	L	D	T	E	S	S	K	K	I	L	A	L	E	D	E	Q	P	I	V	D	A	F	M	K	T	V
Template Known Secondary structure												.	.	.	.	.		S	S	T	T																	T	T	S	S										T	T	S													T	T												T	T
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.						.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
										626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																								.	.
Query SS confidence		.	.	.	.	.	.	.	.																								.	.
Query Sequence		.	.	.	.	.	.	.	.	V	L	E	I	V	R	I	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V
Query Conservation		.	.	.	.	.	.	.	.																								.	.
Alig confidence		.	.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		D	A	S	D	P	L	A	R	I	H	A	L	K	S	A	G	D	F	D	I	F	F	P	V	V	H	G	N	L	G	E	D	G	T	L	Q	G	L	F	K	L	L	D	K	P	Y	V	G	A	P	L	R	G	H	A	V	S	F	D	K	A	L	T	K	E	L	L	T	V	N	G	I	R	N	T	K	Y	I	V	V
Template Known Secondary structure			T	T		T	T					T	T	S	T	T				S							T	T	T	T	T	S	S	S									T	T			B	S	S											S											T	T
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		696	.	.	.					700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		T	A	I	E	.	.	.	.	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																																													.	.
Template Conservation																																																						.	.
Template Sequence		D	P	E	S	A	N	N	W	S	W	D	K	I	V	A	E	L	G	N	I	V	F	V	K	A	A	N	Q	G	S	S	V	G	I	S	R	V	T	N	A	E	E	Y	T	E	A	L	S	D	S	F	Q	.	.	Y	D	Y	K	V	L	I	E	E	A	V	N	G	A	R	E	L	E	V	G	V	I	G	N	D	Q
Template Known Secondary structure			T	T	G	G	G	G										T		S							S	S			S	S	T	T						S												T	T	.	.	T		S																					S	S	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.			.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
		772	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.																	.
Query SS confidence																																																																.																	.
Query Sequence		M	V	L	I	G	G	I	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A	R	T	.
Query Conservation																																																																.																	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																																						.																	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	V	S	E	I	G	A	H	T	V	H	F	Q	.	.	.	.	.	.	.	.	.	.	.	I	P	A	Q	L	S	P	E	V	T	K	E	V	K	Q	M	A	L	D	A	Y	K	V	L	N	L	R	G	E	A	R	M	D	F	L	L	D	E	N	N	V	P	Y	L	G	E	P	N	T	L	P	G	F	T	N
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	S	S																						T	T													T	T										S	S				S	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		635	.	.	.	.	640	.	.	.	.	.	.	.	.												.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
					850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	A	A	R	V	M
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		M	S	L	F	K	R	L	W	D	Y	S	D	I	N	N	A	K	L	V	D	M	L	I
Template Known Secondary structure		T	S	G	G	G	T	T	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions