Phyre 2 alignment of P00968 with c1e4eB

Job Description P00968
Confidence 100.00% Date Thu Jan 5 10:57:25 GMT 2012

Rank 39 Aligned Residues 303

% Identity 19% Template c1e4eB_

PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase

Resolution 2.5 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.				580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure																							.	.	.																																																						.	.
Query SS confidence																							.	.	.																																																						.	.
Query Sequence	D	R	E	K	I	M	V	L	G	G	G	P	N	R	I	G	Q	G	I	E	F	D	.	.	.	Y	C	C	V	H	A	S	L	A	L	R	E	D	G	Y	E	T	I	M	V	N	C	N	P	E	T	V	S	T	D	Y	D	T	S	D	R	L	Y	F	E	P	V	T	L	E	D	V	L	E	I	V	R	I	.	.
Query Conservation																							.	.	.																																																						.	.
Alig confidence										.		.	.	.	.								.	.	.																																																						.	.
Template Conservation										.		.	.	.	.
Template Sequence	N	R	I	K	V	A	I	L	F	.	G	.	.	.	.	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H
Template Known Secondary structure										.		.	.	.	.		S	S	T	T													T	T	S		T	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T
Template Predicted Secondary structure										.		.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10		.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.

													633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	E	K	P	K	G	V	I	V	Q	Y	G	G	Q	T	P	L	.	.	K	L	A	R	A	L	E	A	A	G	V	P	V	I	G	T	S	P	D	A	I	D	R	A	E	D	R	E	R	F	Q	H	A	V	E	R	L	K	L	K	Q	P	A	N	A	T	V	T	A	I
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence	G	L	L	V	K	K	N	H	E	Y	E	I	N	H	V	D	V	A	F	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D
Template Known Secondary structure						S	S	S	S							S								S	T	T	T	T	S	S										T			B	S	S											S											T	T											S	S
Template Predicted Secondary structure
Template SS confidence
	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	M	A	V	E	K	A	K	E	I	G	Y	P	L	V	V	R	P	S	Y	V	L	G	G	R	A	M	E	I	V	Y	D	E	A	D	L	R	R	Y	F	Q	T	A	V	S	V	S	N	D	A	P	V	L	L	D	H	F	L	D	D	A	V	E	V	D	V	D	A	I	C	D	G	E	M	V	L	I	G	G	I
Query Conservation
Alig confidence				.	.																																											.	.											.
Template Conservation				.	.																																											.	.											.
Template Sequence	D	R	P	.	.	V	A	A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	R	Q	Y	D	.	.	S	K	I	L	I	E	Q	A	V	S	.	G	C	E	V	G	C	A	V	L	G	N	S	A	A	L	V	V	G	E	V
Template Known Secondary structure				.	.		G	G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									T	T	T		.	.	S	S									.	S											T	T
Template Predicted Secondary structure				.	.																																											.	.											.
Template SS confidence
	157	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

	779	780	.	.	.	.	.	.	.	.	.	790	.	.											.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.		.	.	.	.	.	.	840	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																										.
Query SS confidence															.	.	.	.	.	.	.	.	.	.																																										.
Query Sequence	M	E	H	I	E	Q	A	G	V	H	S	G	D	S	.	.	.	.	.	.	.	.	.	.	A	C	S	L	P	A	Y	T	L	S	Q	E	I	Q	D	V	M	R	Q	Q	V	Q	K	L	A	F	E	L	Q	V	R	G	L	M	N	V	Q	F	A	V	K	.	N	N	E	V	Y	L	I	E	V	N	P	R	A	A
Query Conservation															.	.	.	.	.	.	.	.	.	.																																										.
Alig confidence															.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation
Template Sequence	D	Q	I	R	L	Q	Y	G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	A	D	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	C	R	G	L	A	R	V	D	M	F	L	Q	D	R	G	R	I	V	L	N	E	V	N	T	L	P	G
Template Known Secondary structure						S	S	S				G	G	G	S	S	S	G	G	G			S	S					S	S		S	S																			T	T													T	T										S	S
Template Predicted Secondary structure
Template SS confidence
	232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

	848	.					850	.	.	.	.	.	.	.	.	.	860	.	.	.	.				.	.	.	.	.	870
Predicted Secondary structure			.	.	.	.																.	.	.
Query SS confidence			.	.	.	.																.	.	.
Query Sequence	R	T	.	.	.	.	V	P	F	V	S	K	A	T	G	V	P	L	A	K	V	.	.	.	A	A	R	V	M	A
Query Conservation			.	.	.	.																.	.	.
Alig confidence			.	.	.	.																.	.	.
Template Conservation
Template Sequence	F	T	S	Y	S	R	Y	P	R	M	M	A	A	A	G	I	S	L	P	E	L	I	D	R	L	I	V	L	A	L
Template Known Secondary structure		S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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