Job Description P76176 Confidence 99.62% Date Thu Jan 5 12:20:09 GMT 2012 Rank 138 Aligned Residues 169 % Identity 18% Template c3qo6B_ PDB info PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1 Resolution 2.50 Å

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		68	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		L	C	T	A	T	L	I	A	P	N	.	L	A	L	T	A	G	H	C	L	L	T	P	P	K	G	K	A	D	K	A	V	A	L	R	F	V	S	N	K	G	L	W	R	Y	E	I	H	D	I	E	G	R	V	D	P	T	L	G	K	R	L	K	A	D	G	D	G	W	I	V	P	P	A	A	A	P	W	D	F
Query Conservation												.
Alig confidence												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	S	G	F	V	W	D	K	Q	G	H	I	V	T	N	Y	H	V	I	R	G	A	S	D	L	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	A	D	Q	T	T	F	D	A	K	V	V	G	F	D	Q	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V
Template Known Secondary structure										T	T	T										T	T		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S												T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		G	L	I	V	L	R	N	P	P	S	G	I	T	P	L	P	L	F	E	G	D	K	A	A	L	T	A	A	L	K	A	A	G	R	K	V	T	Q	A	G	Y	P	E	D	H	L	D	T	L	Y	S	.	H	Q	N	C	E	V	T	G	W	A	Q	T	S	V	M	S	H	Q	C	D	T	L	P	G	D	S	G	S
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		A	V	L	R	I	D	A	P	K	N	K	L	R	P	I	P	V	G	V	S	A	D	L	L	V	G	Q	K	V	F	A	I	G	N	P	F	G	L	D	H	T	L	T	T	G	V	I	S	G	L	R	R	E	I	S	S	A	A	T	G	R	P	I	Q	D	V	I	Q	T	D	A	A	I	N	P	G	N	S	G	G
Template Known Secondary structure										G	G	G						B			S	T	T			T	T									G	G	G		T	T																	S	S	S	S											S				T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	M	L	H	T	D	D	G	W	Q	L	I	G	V	Q	S	S	A	P	A	A	K	D	R	W	R	A	D	N	R	A	I	S	V	T	G	F	R	D	K	L	D	Q	L
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		P	L	L	.	.	.	D	S	S	G	T	L	I	G	I	N	T	A	I	Y	S	P	S	G	A	S	S	G	V	G	F	S	I	P	V	D	T	V	G	G	I	V	D	Q	L
Template Known Secondary structure					.	.	.		T	T	S												S	S	S	S			S
Template Predicted Secondary structure					.	.	.
Template SS confidence
		285	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions