Job Description P76176 Confidence 99.53% Date Thu Jan 5 12:20:09 GMT 2012 Rank 147 Aligned Residues 177 % Identity 15% Template c3mmgB_ PDB info PDB header:viral protein, hydrolase Chain: B: PDB Molecule:nuclear inclusion protein a; PDBTitle: crystal structure of tobacco vein mottling virus protease Resolution 1.70 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		V	G	Q	L	E	T	A	S	G	N	L	C	T	.	.	.	A	T	L	I	A	P	N	L	A	L	T	A	G	H	C	L	L	T	P	P	K	G	K	A	D	K	A	V	A	L	R	F	V	S	N	K	G	L	W	R	Y	E	I	H	D	I	E	G	R	V	D	P	T	L	G	K	R	L	K	A	D	G	D	G
Query Conservation															.	.	.
Alig confidence															.	.	.						.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	C	L	L	E	N	S	S	D	G	H	S	E	R	L	F	G	I	G	F	G	.	P	Y	I	I	A	N	Q	H	L	F	R	R	N	N	G	E	L	T	I	K	T	M	H	G	E	F	A	V	A	N	S	T	Q	L	Q	M	K	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T											T	.	T						G	G	G	G	S	S			S							T	T						S		G	G	G	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	V	P	P	A	A	A	P	W	D	F	G	L	I	V	L	R	N	P	P	S	G	I	T	P	L	P	L	F	E	G	D	K	A	A	L	T	A	A	L	K	A	A	G	R	K	V	T	Q	A	G	Y	P	E	D	H	L	D	T	L	Y	S	H	Q	N	C	E	V	T	G	W	A	Q	T	S	V	M	S	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.																				.	.																									.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																				.	.																									.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	G	R	D	I	I	V	I	K	M	A	K	D	F	P	P	F	P	Q	.	.	K	L	K	F	R	Q	P	T	I	K	D	R	V	C	M	V	S	T	N	F	Q	Q	K	S	.	.	.	.	.	.	V	S	S	L	V	S	E	S	S	H	I	V	H	K	E	D	T	S	F	W	Q	H
Template Known Secondary structure		.	.	.	.	.	.	.	T	B	S	S								T	T	S					S	.	.				B					T	T										S	S		G	G	.	.	.	.	.	.	G								B						T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																				.	.																									.	.	.	.	.	.
Template SS confidence
									78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	C	D	T	L	P	G	D	S	G	S	P	L	M	L	H	T	D	D	G	W	Q	L	I	G	V	Q	S	S	A	P	A	A	K	D	R	W	R	A	D	N	R	A	I	S	V	T	G	F	R	D	K	L	D	Q	L	S	Q	K
Query Conservation
Alig confidence																						.	.									.	.
Template Conservation																						.	.									.	.
Template Sequence		W	I	T	T	K	D	G	Q	A	G	S	P	L	V	S	I	I	D	G	N	.	.	I	L	G	I	H	S	L	T	.	.	H	T	T	N	G	S	N	Y	F	V	E	F	P	E	K	F	V	A	T	Y	L	D	A	A	D	G	W
Template Known Secondary structure							T	T		T	T						T	T	T			.	.									.	.		T	T	T										T	T						T	S			S	S
Template Predicted Secondary structure																						.	.									.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.			.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions