Job Description P76176 Confidence 99.94% Date Thu Jan 5 12:20:09 GMT 2012 Rank 70 Aligned Residues 213 % Identity 16% Template c2zchP_ PDB info PDB header:immune system Chain: P: PDB Molecule:prostate-specific antigen; PDBTitle: crystal structure of human prostate specific antigen2 complexed with an activating antibody Resolution 2.83 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	G	H	D	D	R	V	P	V	N	D	T	T	Q	S	P	W	D	A	V	G	Q	L	E	T	A	S	G	N	L	C	T	A	T	L	I	A	P	N	L	A	L	T	A	G	H	C	L	L	T	P	P	K	G	K	A	D	K	A	V	A	L	R	F	V	S	N	K	G	L	W	R	Y	E	I	H	D	I	E
Query Conservation
Alig confidence								.	.	.	.												.	.																															.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.												.	.																															.	.	.	.	.	.	.	.	.
Template Sequence		I	V	G	G	W	E	.	.	.	.	C	E	K	H	S	Q	P	W	Q	V	L	.	.	V	A	S	R	G	R	A	V	C	G	G	V	L	V	H	P	Q	W	V	L	T	A	A	H	C	I	R	N	K	S	.	.	.	.	.	.	.	.	.	V	I	L	L	G	R	H	S	L	F	H	P	E	D	T	G	Q	V
Template Known Secondary structure			B	S				.	.	.	.			T	T	S		T	T				.	.			S	S	S	S										T	T						G	G	G			S	S		.	.	.	.	.	.	.	.	.					S		S	B	S	S	S			T	T
Template Predicted Secondary structure								.	.	.	.												.	.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.										.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		G	R	V	D	P	T	L	G	K	R	L	K	A	D	G	D	.	.	.	G	W	I	V	P	P	A	A	A	P	W	D	F	G	L	I	V	L	R	N	P	P	S	G	I	T	P	L	P	L	F	E	G	D	K	A	A	L	T	A	A	L	K	A	A	G	R	K	V	T	Q	A	G	Y	P	E	D	H	L	D	T
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		F	Q	V	S	H	S	F	P	H	P	L	Y	D	M	S	L	L	K	N	R	F	L	R	P	G	D	D	S	S	H	D	L	M	L	L	R	L	S	E	P	A	E	L	T	D	A	V	K	V	M	D	L	P	T	Q	E	P	A	L	G	T	T	C	Y	A	S	G	W	G	S	I	E	P	E	E	F	L	T	P	K
Template Known Secondary structure											T	T	S		G	G	G	G	T	S	S	S			T	T		B		T	T								S	S						S	S								S	S				T	T								S			S	S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		195	.	.	.	.	200	.	.	.	.	.																.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	S	H	Q	N	C	E	V	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	A	Q	T	S	V	M	S	H	Q	C	D	T	L	P	G	D	S	G	S	P	L	M	L	H	T	D	D	G	W	Q	L	I	G	V	Q	S	S	A	P	A	A	K	D	R	W	R	A	D	N	R	A	I	S
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		K	L	Q	C	V	D	L	H	V	I	S	N	D	V	C	A	Q	V	H	P	Q	K	V	T	K	F	M	L	C	A	G	R	W	T	G	G	K	S	T	C	S	G	D	S	G	G	P	L	V	.	.	.	.	C	N	G	V	L	Q	G	I	T	S	W	G	S	E	P	C	A	L	P	E	R	P	S	L	Y	T	K
Template Known Secondary structure		B																			S	S	B			T	T							T	T		S		B			T	T		T	T					.	.	.	.	S	S	S	S										S	S	T	T		T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	G	F	R	D	K	L	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	H	Y	R	K	W	I	K	D
Template Known Secondary structure		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions