Job Description P76176 Confidence 100.00% Date Thu Jan 5 12:20:09 GMT 2012 Rank 2 Aligned Residues 231 % Identity 17% Template c2b9lA_ PDB info PDB header:immune system/protein binding Chain: A: PDB Molecule:prophenoloxidase activating factor; PDBTitle: crystal structure of prophenoloxidase activating factor-ii from the2 beetle holotrichia diomphalia Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		P	D	V	A	R	S	A	N	D	E	V	S	T	L	F	F	G	H	.	D	D	R	V	P	V	N	D	T	T	Q	S	P	W	D	A	V	G	Q	L	E	T	A	S	G	N	L	C	T	A	T	L	I	A	P	N	L	A	L	T	A	G	H	C	L	L	T	P	P	K	G	K	A	D	K	A	V	A	L	R	F
Query Conservation																				.
Alig confidence																				.			.	.	.	.																																														.
Template Conservation																							.	.	.	.																																														.
Template Sequence		S	F	C	G	I	R	N	E	R	G	L	D	F	K	I	T	G	Q	T	N	E	.	.	.	.	A	E	Y	G	E	F	P	W	M	V	A	V	L	K	A	N	E	E	Q	L	V	C	G	G	S	L	I	A	P	S	V	V	L	T	G	A	H	C	V	N	S	Y	Q	S	N	.	L	D	A	I	K	I	R	A	G
Template Known Secondary structure				T	T	B			T	T		S	S					S		S	S	B	.	.	.	.			T	T	S	S	T	T											S										T	T										G	G	G	T	T		.	G	G	G						S
Template Predicted Secondary structure																							.	.	.	.																																														.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		V	S	N	K	G	L	W	R	Y	E	I	H	D	I	E	G	R	V	D	P	T	L	G	K	R	L	K	A	D	G	D	G	W	I	V	P	P	A	A	A	P	W	D	F	G	L	I	V	L	R	N	P	P	S	.	.	.	G	I	T	P	L	P	L	F	E	G	D	K	A	A	L	T	A	A	L	K	A	A	G
Query Conservation																																																								.	.	.
Alig confidence																													.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence		E	W	D	T	L	T	E	K	E	R	L	P	Y	Q	E	R	K	I	R	Q	V	I	I	H	S	N	F	.	.	.	.	.	.	.	.	N	P	K	T	V	V	N	D	V	A	L	L	L	L	D	R	P	L	V	Q	A	D	N	I	G	T	I	C	L	P	Q	Q	S	Q	I	F	D	S	T	E	C	F	A	S	G
Template Known Secondary structure				B	T	T				S	S	S														T	T		.	.	.	.	.	.	.	.		T	T	T		T	T								S	S			B			T	T					B				T	T						S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.								.	.	.	.	.	.	.	.	200	.	.															.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.				.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query SS confidence														.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Query Sequence		R	K	V	T	Q	A	G	Y	P	E	D	H	.	.	.	.	.	.	.	L	D	T	L	Y	S	H	Q	N	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	G	W	A	Q	T	S	V	M	S	H	Q	C	D	T	L	P	G	D	S	G	S	P	L	M	L	H	T	.	.	.	D	D	G	W
Query Conservation														.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Alig confidence														.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.										.																				.	.	.
Template Conservation																																																							.
Template Sequence		W	G	K	K	E	F	G	S	R	H	R	Y	S	N	I	L	K	K	I	Q	L	P	T	V	D	R	D	K	C	Q	A	D	L	R	N	T	R	L	G	L	K	F	V	L	D	Q	T	F	V	C	A	G	G	.	E	Q	G	K	D	T	C	T	G	D	G	G	S	P	L	F	C	P	D	P	R	N	P	S	R	Y
Template Known Secondary structure				T	T	T	T	T		T	T	S	S			B																				T	T	T	T		T	T					T	T							.	B	S	S		S			S	S		T	T								T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	I	G	V	Q	S	S	A	P	A	A	K	D	R	W	R	A	D	N	R	A	I	S	V	T	G	F	R	D	K	L	D	Q
Query Conservation
Alig confidence																				.
Template Conservation																				.
Template Sequence		M	Q	M	G	I	V	A	W	G	I	G	C	G	D	E	N	V	P	.	G	V	Y	A	N	V	A	H	F	R	N	W	I	D	Q
Template Known Secondary structure								S		T	T				B	S	S	S		.						G	G	G	G
Template Predicted Secondary structure																				.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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