Job Description P0A6K1 Confidence 98.58% Date Thu Jan 5 11:03:19 GMT 2012 Rank 22 Aligned Residues 260 % Identity 16% Template c3g7kD_ PDB info PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase Resolution 2.70 Å

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		14	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.						.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.
Predicted Secondary structure													.	.												.	.	.	.	.								.	.	.	.	.																															.	.	.	.	.	.
Query SS confidence													.	.												.	.	.	.	.								.	.	.	.	.																															.	.	.	.	.	.
Query Sequence		M	V	V	D	A	V	T	Q	N	V	F	.	.	F	S	P	E	L	I	R	R	L	A	D	.	.	.	.	.	R	H	L	G	V	G	F	.	.	.	.	.	D	Q	L	L	V	V	E	P	P	Y	D	P	E	L	D	F	H	Y	R	I	F	N	A	D	G	S	E	V	A	Q	.	.	.	.	.	.	C	G	N
Query Conservation													.	.												.	.	.	.	.								.	.	.	.	.																															.	.	.	.	.	.
Alig confidence													.	.												.	.	.	.	.								.	.	.	.	.																								.							.	.	.	.	.	.
Template Conservation																																																																		.
Template Sequence		I	F	L	K	G	N	D	L	P	A	D	Q	E	L	R	D	K	V	I	L	R	I	F	G	S	P	D	V	R	Q	I	D	G	L	A	G	A	D	P	L	T	S	K	L	A	I	I	G	P	S	T	H	P	D	A	D	V	D	Y	T	F	A	Q	V	.	S	I	T	D	A	V	V	D	Y	N	G	N	C	G	N
Template Known Secondary structure						G	G	G	S		S	S													T		S		T	T		T	T	S	S	S		S	S	G	G	G											S	T	T		S									.		S	S	S	S					S	S			T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.																	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																					.	.	.	.	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	R	C	F	A	R	F	V	R	L	K	G	L	T	N	K	R	D	.	.	.	.	.	I	R	V	S	T	A	N	G	R	M	V	L	T	V	.	.	T	D	D	D	L	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	M	G	E	P	N	F	E	P	S	A	V	P	F	R	A
Query Conservation																					.	.	.	.	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.															.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	A	G	V	G	P	F	A	I	D	E	S	F	V	K	A	V	E	P	M	T	R	V	C	I	H	N	T	N	T	G	K	L	L	Y	A	E	V	E	V	E	D	G	K	A	K	V	S	G	D	C	K	I	D	G	V	P	G	T	N	A	P	E	L	M	D	F	S	D	T	A	G	A	A	T	G	K	V	L
Template Known Secondary structure		G	G	G	G								T	T	S	S				S	S									T	T	T												T	T							S	B			T	T	S	S	S		B								G	G	G	B	T	T	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																					.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	A	E	K	T	Y	I	M	R	A	A	E	Q	T	I	L	C	G	V	V	S	M	G	N	P	H	C	V	I	Q	V	D	D	V	.	.	.	.	.	.	D	T	A	A	V	E	T	L	G	P	V	L	E	S	H	E	R	F	P	E	R	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	G	N	V	V	D	V	L	S	T	S	K	G	D	I	D	V	S	I	V	D	V	A	N	P	C	I	F	V	H	A	K	D	V	N	M	T	G	T	E	T	P	D	V	I	N	G	N	A	D	L	L	A	Y	L	E	E	I	R	A	K	C	C	V	K	I	G	M	A	A	T	E	K	E	A	S	E	K	S
Template Known Secondary structure		T	T	S		S	S						T	T	S									B	S	S							S	G	G	G	T			S									T																				T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
							191	.	.	.	.	.															.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.											.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	I	G	F	M	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	R	E	H	I	R	L	R	V	Y	E	R	G	A	G	E	T	Q	A	C	G	S	G	A	C	A	A	V	A	V	G	I	Q	Q	G	L	.	.	.	.	.	.	.	.	.	.	L	A	E	E	V	R	V	E
Query Conservation		.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	F	P	M	I	A	F	V	T	K	P	E	D	Y	V	D	F	S	T	G	N	T	I	S	G	D	D	V	D	L	V	S	R	L	M	F	M	Q	V	L	H	K	T	Y	A	G	T	A	T	A	C	T	G	S	A	A	R	I	P	G	T	I	V	N	Q	V	L	R	D	T	G	D	E	D	T	V	R	I	G
Template Known Secondary structure		S	S	S	S														T	T	T						T	T	S		S								T	T				S	S														T	S	T	T	S						S				T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		L	P	G	G	R	L	D	I	A	W	K	G	P	G	H	P	L	.	.	.	Y	M	T	G	P	A	V	H	V	Y	D	G	F	I	H	L
Query Conservation																			.	.	.
Alig confidence																			.	.	.
Template Conservation
Template Sequence		H	P	A	G	V	I	P	V	V	S	I	V	K	D	G	K	V	E	K	A	A	L	I	R	T	A	R	R	I	M	E	G	Y	V	Y	V
Template Known Secondary structure			T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions