Job Description P0A6K1 Confidence 100.00% Date Thu Jan 5 11:03:19 GMT 2012 Rank 3 Aligned Residues 253 % Identity 31% Template c3fveA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:diaminopimelate epimerase; PDBTitle: crystal structure of diaminopimelate epimerase mycobacterium2 tuberculosis dapf Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.															.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	F	S	K	M	H	G	L	G	N	D	F	M	V	V	D	A	V	T	Q	N	V	F	F	S	P	E	L	I	R	R	L	A	D	R	H	L	G	V	G	F	D	Q	L	L	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	P	Y	D	P	E	L	D	F	H	Y	R	I	F	N	A	D
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	F	A	K	G	H	G	T	Q	N	D	F	V	L	L	P	D	V	D	A	E	L	V	L	T	A	A	R	V	A	A	L	C	D	R	R	K	G	L	G	A	D	G	V	L	R	V	T	T	A	G	A	A	Q	A	V	G	V	L	D	S	L	P	E	G	V	R	V	T	D	W	Y	M	D	Y	R	N	A	D
Template Known Secondary structure									S	S	S									T	T			S													T	T	T	S				S														T	T	S		S	S			T	T			T	T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		G	S	E	V	A	Q	C	G	N	G	A	R	C	F	A	R	F	V	R	L	K	G	L	T	N	K	R	D	I	R	V	S	T	A	N	G	R	M	V	L	T	V	T	D	D	D	.	.	.	.	L	V	R	V	N	M	G	E	P	N	F	E	P	S	A	V	P	F	R	A	N	K	A	E	K	T	Y	I	M	R
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	A	A	Q	M	C	G	N	G	V	R	V	F	A	H	Y	L	R	A	S	G	L	E	V	R	D	E	F	V	V	G	S	L	A	G	P	R	P	V	T	C	H	H	V	E	A	A	Y	A	D	V	S	V	D	M	G	K	A	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G
Template Known Secondary structure		S		B			T	T		T	T											T	T	S				S							T	T												S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																		.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		A	A	E	Q	T	I	L	C	G	V	V	S	M	G	N	P	H	C	V	I	Q	V	D	D	V	D	T	A	A	V	E	T	L	G	P	V	L	E	.	S	H	E	R	F	P	E	R	A	N	I	G	F	M	Q	V	V	K	R	E	H	I	R	L	R	V	Y	E	R	G	A	G	E	T	Q	A	C	G	S	G	A
Query Conservation																																								.
Alig confidence																																								.
Template Conservation
Template Sequence		A	G	E	A	V	F	H	G	L	A	V	D	V	G	N	P	H	L	A	C	V	D	S	Q	L	T	V	D	G	L	A	A	L	D	V	G	V	S	F	D	G	A	Q	F	P	D	G	V	N	V	E	V	L	T	A	P	V	D	G	A	V	W	M	R	V	H	E	R	G	V	G	E	T	R	S	C	G	T	G	T
Template Known Secondary structure					B									S	S	S								T	T			T	T	T	T		S							B		T	T	T		T	T											B	T	T								B	T	T	T	B	S		S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		222	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		C	A	A	V	A	V	G	I	Q	Q	.	G	L	L	A	E	E	V	R	V	E	L	P	G	G	R	L	D	I	A	W	K	G	P	G	H	P	L	Y	M	T	G	P	A	V	H	V	Y	D	G	F	I
Query Conservation												.
Alig confidence												.																					.	.
Template Conservation																																	.	.
Template Sequence		V	A	A	A	V	A	A	L	A	A	V	G	S	P	T	G	T	L	T	V	H	V	P	G	G	E	V	V	V	T	V	.	.	T	D	A	T	S	F	L	R	G	P	S	V	L	V	A	R	G	D	L
Template Known Secondary structure												T	T		S	S								T	T								.	.		S	S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions