Job Description P0A6K1 Confidence 98.44% Date Thu Jan 5 11:03:19 GMT 2012 Rank 23 Aligned Residues 261 % Identity 20% Template c2pw0A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis Resolution 1.57 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.								.	.	30	.	.	.	.	.	.	.							.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.
Predicted Secondary structure																.	.	.	.	.	.	.											.	.	.	.	.	.						.	.	.	.	.																							.	.									.
Query SS confidence																.	.	.	.	.	.	.											.	.	.	.	.	.						.	.	.	.	.																							.	.									.
Query Sequence		M	V	V	D	A	V	T	Q	N	V	F	F	S	P	.	.	.	.	.	.	.	E	L	I	R	R	L	A	D	R	H	.	.	.	.	.	.	L	G	V	G	F	.	.	.	.	.	D	Q	L	L	V	V	E	P	P	Y	D	P	E	L	D	F	H	Y	R	I	F	N	.	.	A	D	G	S	E	V	A	Q	.
Query Conservation																.	.	.	.	.	.	.											.	.	.	.	.	.						.	.	.	.	.																							.	.									.
Alig confidence																.	.	.	.	.	.	.											.	.	.	.	.	.						.	.	.	.	.																							.	.									.
Template Conservation
Template Sequence		V	F	F	R	L	Q	D	L	P	E	A	A	Q	V	P	G	P	A	R	D	A	L	L	L	R	V	I	G	S	P	D	P	Y	A	K	Q	I	D	G	M	G	G	A	T	S	S	T	S	K	T	V	I	L	S	H	S	S	K	A	N	H	D	V	D	Y	L	F	G	Q	V	S	I	D	K	P	F	V	D	W	S
Template Known Secondary structure						G	G	G	S		G	G	G	S	S	S	S												T		S		T	T	S	S		T	T	S	S			S	S	T	T	T	S										S	T	T		S										S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
				73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.										.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure		.	.																					.	.	.	.	.	.	.	.	.																	.	.								.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																					.	.	.	.	.	.	.	.	.																	.	.								.	.	.	.	.	.	.	.	.
Query Sequence		.	.	C	G	N	G	A	R	C	F	A	R	F	V	R	L	K	G	L	T	N	K	.	.	.	.	.	.	.	.	.	R	D	I	R	V	S	T	A	N	G	R	M	V	L	T	V	.	.	T	D	D	D	L	V	R	.	.	.	.	.	.	.	.	.	V	N	M	G	E	P	N	F	E	P	S	A	V	P	F
Query Conservation		.	.																					.	.	.	.	.	.	.	.	.																	.	.								.	.	.	.	.	.	.	.	.
Alig confidence		.	.																					.	.	.	.	.	.	.	.	.																	.	.								.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	C	G	N	L	T	A	A	V	G	A	F	A	I	S	N	G	L	I	D	A	A	R	I	P	R	N	G	V	C	T	V	R	I	W	Q	A	N	I	G	K	T	I	I	A	H	V	P	I	T	D	G	A	V	Q	E	T	G	D	F	E	L	D	G	V	T	F	P	A	A	E	V	Q	I	E	F	M	N	P
Template Known Secondary structure		S			T	T	T											T	T		S		G	G	G			S	S										T	T	T	T											T	T							S	B			T	T		S	S		B									S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																											.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	N	K	A	E	K	T	Y	I	M	R	A	A	E	.	.	.	.	Q	T	I	L	C	G	V	V	S	M	G	N	P	H	C	V	I	Q	V	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	T	A	A	V	E	T	L	G	P	V	L	E
Query Conservation																	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	D	M	F	P	T	G	N	L	V	D	V	L	E	V	P	G	I	G	R	F	N	A	T	M	I	N	A	G	I	P	T	I	F	I	N	A	E	D	L	G	Y	T	G	T	E	L	Q	D	D	I	N	S	D	N	A	A	L	A	K	F	E	T	I	R	A	H	G	A	L	R	M	G	L	I	K	H	I	D
Template Known Secondary structure		B		.			T	T	S		S	S						T	T	T										B	S	S							G	G	G	G	T			S								T	T																			T	T	S		S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.														.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.										.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	E	R	F	P	E	R	A	N	I	G	F	M	Q	V	V	K	R	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	L	R	V	Y	E	R	G	A	G	E	T	Q	A	C	G	S	G	A	C	A	A	V	A	V	G	I	Q	Q	G	L	.	.	.	.	.	.	.	.	.	L	A	E	E	V
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	S	R	Q	H	T	P	K	I	A	F	V	A	P	P	K	S	Y	A	S	S	S	G	K	T	V	A	A	E	D	V	D	L	L	V	R	A	L	S	M	G	K	L	H	H	A	M	M	G	T	A	A	V	A	I	G	T	A	A	A	I	P	G	T	L	V	N	L	A	A	G	G	G	E	K	E	A	V
Template Known Secondary structure		G	G	G	G			S	S	S							S							T	T	S					G	G	G		S								T	T				S	S														T	S	T	T	S						T	T	S	S			S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		239	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure													.	.									.	.	.	.	.
Query SS confidence													.	.									.	.	.	.	.
Query Sequence		R	V	E	L	P	G	G	R	L	D	I	.	.	A	W	K	G	P	G	H	P	.	.	.	.	.	L	Y	M	T	G	P	A	V	H	V	Y	D	G	F	I	H	L
Query Conservation													.	.									.	.	.	.	.
Alig confidence													.	.									.	.	.	.	.
Template Conservation
Template Sequence		R	F	G	H	P	S	G	T	L	R	V	G	A	Q	A	V	Q	E	N	G	E	W	T	V	I	K	A	I	M	S	R	S	A	R	V	L	M	E	G	F	V	R	V
Template Known Secondary structure						T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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