Job Description P0A6K1 Confidence 100.00% Date Thu Jan 5 11:03:19 GMT 2012 Rank 13 Aligned Residues 271 % Identity 15% Template c1w62B_ PDB info PDB header:racemase Chain: B: PDB Molecule:b-cell mitogen; PDBTitle: proline racemase in complex with one molecule of pyrrole-2-2 carboxylic acid (hemi form) Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.						.	.	20	.	.	.	.	.	.	.	.	.	30								.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure															.					.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence															.					.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		M	Q	F	S	K	M	H	G	L	G	N	D	F	.	M	V	V	D	.	.	.	.	.	A	V	T	Q	N	V	F	F	S	P	E	L	I	.	.	.	.	.	.	.	R	R	L	A	D	R	H	L	G	V	G	F	D	Q	L	L	V	V	E	P	P	Y	D	P	E	L	D	F	H	Y	R	I	F	N	A	D	G
Query Conservation															.					.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence															.					.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	C	I	D	M	H	T	E	G	E	A	A	R	I	V	T	S	G	L	P	H	I	P	G	S	N	M	A	E	K	K	A	Y	L	Q	E	N	M	D	Y	L	R	R	G	I	M	L	E	P	R	G	H	D	D	M	F	G	A	F	L	F	D	P	I	E	E	G	A	D	L	G	I	V	F	M	D	T	G	G
Template Known Secondary structure										T	T																S	S																					S	B	T	T	S		T	T											S	T	T		S								S	S
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.								.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		S	E	V	A	Q	C	G	N	G	A	R	C	F	A	R	F	V	R	L	K	G	L	T	N	K	R	D	.	.	.	.	.	.	I	R	V	S	T	A	N	G	R	M	V	L	T	V	T	D	D	D	L	.	.	.	.	.	.	.	V	R	V	N	M	G	E	P	N	F	E	P	S	A	V	P	F	R	A	N	K
Query Conservation																													.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence		.																											.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	Y	L	N	M	C	G	H	N	S	I	A	A	V	T	A	A	V	E	T	G	I	V	S	V	P	A	K	A	T	N	V	P	V	V	L	D	T	P	A	G	L	V	R	G	T	A	H	L	Q	S	G	T	E	S	E	V	S	N	A	S	I	I	N	V	P	S	F	L	Y	Q	Q	D	V	V	V	V	L	P	K
Template Known Secondary structure		.	S			S	T	T													T	T	S	S				T	T		S									T	T											T	T		S	S												B													T
Template Predicted Secondary structure		.
Template SS confidence
			126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.										.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		A	E	K	T	Y	I	M	R	A	A	E	Q	T	I	L	C	G	V	V	S	M	G	N	P	H	C	V	I	Q	V	D	D	V	D	T	A	A	V	E	T	L	G	P	V	L	E	S	.	.	.	.	.	.	.	.	.	H	E	R	F	P	E	R	A	N	I	G	F	M	Q	V	V	K	R	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Alig confidence																																					.	.											.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation																																					.	.
Template Sequence		P	Y	G	E	V	R	V	D	I	A	F	G	G	N	F	F	A	I	V	P	A	E	Q	L	G	I	D	I	S	V	Q	N	L	S	R	.	.	L	Q	E	A	G	E	L	L	R	T	E	I	N	R	S	V	K	V	Q	H	P	Q	L	P	H	I	N	T	V	D	C	V	E	I	Y	G	P	P	T	N	P	E	A
Template Known Secondary structure		T	T										S	S	S											T					S	T	T				.	.																					S	S		T	T			S											S	S	T	T	S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																				.
Predicted Secondary structure																																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	H	I	R	L	R	V	Y	E	R	G	A	G	E	T	Q	A	C	G	S	G	A	C	A	A	V	A	V	G	I	Q	Q	G	L	L	A	E	E	.	.	.	V	R	V	E	L	P	G	G	R	L	D	I	A	W	K	G	P	G	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	K	N	V	V	I	F	G	N	R	Q	A	D	R	S	P	C	G	T	G	T	S	A	K	M	A	T	L	Y	A	K	G	Q	L	R	I	G	E	T	F	V	Y	E	S	I	L	G	S	L	F	Q	G	R	V	L	G	E	E	R	I	P	G	V	K	V	P	V	T	K	D	A	E	E	G	M	L	V	V	T
Template Known Secondary structure		S								T	T	T				S	S																T	T		S		T	T								T	T	S															T				T	T	S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	M	T	G	P	A	V	H	V	Y	D	G	F	I	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	I	T	G	K	A	F	I	M	G	F	N	T	M	L	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions