Job Description P0A6K1 Confidence 100.00% Date Thu Jan 5 11:03:19 GMT 2012 Rank 6 Aligned Residues 260 % Identity 17% Template c1qy9B_ PDB info PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ydde; PDBTitle: crystal structure of e. coli se-met protein ydde Resolution 2.05 Å

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		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		F	S	K	M	H	G	L	G	N	D	F	.	M	V	V	D	A	V	T	Q	N	V	F	F	S	P	E	L	I	R	R	L	A	D	R	H	L	G	V	G	F	D	Q	L	L	V	V	E	P	P	Y	D	P	E	L	D	F	H	Y	R	I	F	N	A	D	G	S	E	V	A	Q	C	G	N	G	A	R	C	F	A
Query Conservation													.
Alig confidence													.																				.	.	.	.	.	.	.													.	.															.
Template Conservation																																	.	.	.	.	.	.	.													.	.															.
Template Sequence		F	T	S	Q	P	F	R	G	N	S	A	G	V	V	F	P	A	D	N	L	S	E	A	Q	X	Q	L	I	A	R	E	.	.	.	.	.	.	.	L	G	H	S	E	T	A	F	L	L	H	S	.	.	D	D	S	D	V	R	I	R	Y	F	T	P	T	V	.	E	V	P	I	C	G	H	A	T	V	A	A	H
Template Known Secondary structure		S		S	S	T	T		S										T	T													.	.	.	.	.	.	.				S									.	.	S	S	S	S								S	S	S	.			S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.													.	.															.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.								.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.																		.	.
Query SS confidence																																	.	.	.																		.	.
Query Sequence		R	F	V	R	L	K	G	L	T	N	K	R	D	I	R	V	S	T	A	N	G	R	M	V	L	T	V	T	D	D	D	.	.	.	L	V	R	V	N	M	G	E	P	N	F	E	P	S	A	V	P	.	.	F	R	A	N	K	A	E	K	T	Y	I	M	R	A	A	E	Q	T	I	L	C	G	V	V	S	M	G
Query Conservation																																	.	.	.																		.	.
Alig confidence																																	.	.	.																		.	.
Template Conservation
Template Sequence		Y	V	R	A	K	V	L	G	L	G	N	C	T	I	W	Q	T	S	L	A	G	K	H	R	V	T	I	E	K	H	N	D	D	Y	R	I	S	L	E	Q	G	T	P	G	F	E	P	P	L	E	G	E	T	R	A	A	I	I	N	A	L	H	L	T	E	D	D	I	L	P	G	L	P	I	Q	V	A	T	T	G
Template Known Secondary structure									T			S								T	T											T	T																													T	T			G	G	G	B		T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																											.	.	.	.																.	.
Query SS confidence																																											.	.	.	.																.	.
Query Sequence		N	P	H	C	V	I	Q	V	D	D	V	D	T	A	A	V	E	T	L	G	P	V	L	E	S	H	E	R	F	P	E	R	A	N	I	G	F	M	Q	V	V	.	.	.	.	K	R	E	H	I	R	L	R	V	Y	E	R	G	A	G	.	.	E	T	Q	A	C	G	S	G	A	C	A	A	V	A	V	G	I	Q
Query Conservation																																											.	.	.	.																.	.
Alig confidence															.	.																											.	.	.	.																.	.
Template Conservation															.	.
Template Sequence		H	S	K	V	X	I	P	L	K	P	E	V	D	.	.	I	D	A	L	S	P	D	L	N	A	L	T	A	I	S	K	K	I	G	C	N	G	F	F	P	F	Q	I	R	P	G	K	N	E	T	D	G	R	X	F	S	P	A	I	G	I	V	E	D	P	V	T	G	N	A	N	G	P	X	G	A	W	L	V	H
Template Known Secondary structure		S							B		T	T	S		.	.	G	G	G																T											T	T	S	S									G	G	G	T					S	S
Template Predicted Secondary structure															.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.						.	.	240	.	.						.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure									.	.	.	.	.						.	.	.	.	.																.	.	.
Query SS confidence									.	.	.	.	.						.	.	.	.	.																.	.	.
Query Sequence		Q	G	L	L	A	E	E	.	.	.	.	.	V	R	V	E	L	.	.	.	.	.	P	G	G	R	L	D	I	A	W	K	G	P	G	H	P	.	.	.	L	Y	M	T	G	P	A	V	H	V	Y	D	G	F	I	H	L
Query Conservation									.	.	.	.	.						.	.	.	.	.																.	.	.
Alig confidence									.	.	.	.	.						.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		H	N	V	L	P	H	D	G	N	V	L	R	V	K	G	H	Q	G	R	A	L	G	R	D	G	X	I	E	V	T	V	T	I	R	D	N	Q	P	E	K	V	T	I	S	G	T	A	V	I	L	F	H	A	E	W	A	I
Template Known Secondary structure		T	T		S			S	T	T										T	T	T	T													T	T																				S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions