Phyre 2 alignment of P00935 with d2q7wa1

Job Description P00935
Confidence 99.89% Date Wed Jan 25 15:20:10 GMT 2012

Rank 175 Aligned Residues 292

% Identity 16% Template d2q7wa1

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 1.40

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	48	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.									.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure							.													.	.	.	.	.	.	.	.								.	.																.	.
Query SS confidence							.													.	.	.	.	.	.	.	.								.	.																.	.
Query Sequence	R	R	G	N	P	T	.	R	D	V	V	Q	R	A	L	A	E	L	E	.	.	.	.	.	.	.	.	G	G	A	G	A	V	L	.	.	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	.	.	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R
Query Conservation							.													.	.	.	.	.	.	.	.								.	.																.	.
Alig confidence							.													.	.	.	.	.	.	.	.								.	.																.	.
Template Conservation
Template Sequence	N	Y	L	G	I	D	G	I	P	E	F	G	R	C	T	Q	E	L	L	F	G	K	G	S	A	L	I	N	D	K	R	A	R	T	A	Q	T	P	G	G	T	G	A	L	R	V	A	A	D	F	L	A	K	N	T	S	V	K	R	V	W	V	S	N	P	S	W	P	N	H	K	S	V	F	N	S	A	G	L	E
Template Known Secondary structure					T	T																T	T						T	T								S																	S										S			T									T	T
Template Predicted Secondary structure
Template SS confidence
	64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.

	115	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure												.	.	.															.	.	.																	.	.	.																												.	.	.
Query SS confidence												.	.	.															.	.	.																	.	.	.																												.	.	.
Query Sequence	G	C	Y	R	V	L	F	V	D	Q	G	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	.	.	.	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	.	.	.	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	.	.	.
Query Conservation												.	.	.															.	.	.																	.	.	.																												.	.	.
Alig confidence												.	.	.															.	.	.																	.	.	.																												.	.	.
Template Conservation
Template Sequence	V	R	E	Y	A	Y	Y	D	A	E	N	H	T	L	D	F	D	A	L	I	N	S	L	N	E	A	Q	A	G	D	V	V	L	F	H	G	C	C	H	N	P	T	G	I	D	P	T	L	E	Q	W	Q	T	L	A	Q	L	S	V	E	K	G	W	L	P	L	F	D	F	A	Y	Q	G	F	A	R	G	L	E	E
Template Known Secondary structure									T	T	T	T												T	T			T	T								S	S		T	T	T																				T								S		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

							183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure	.	.	.	.	.	.																																		.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.																																		.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	N	P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	.	.	.	.	.	.	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P
Query Conservation	.	.	.	.	.	.																																		.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																		.																.	.	.	.	.	.																																		.	.
Template Conservation																								.																																																							.	.
Template Sequence	D	A	E	G	L	R	A	F	A	A	M	H	K	E	L	I	V	A	S	S	Y	S	N	.	F	G	L	Y	N	E	R	V	G	A	C	T	L	V	A	A	D	S	E	T	V	D	R	A	F	S	Q	M	K	A	A	I	R	A	N	Y	S	N	P	P	A	H	G	A	S	V	V	A	T	I	L	S	N	D	.	.
Template Known Secondary structure		T											S											.		S		G	G	G										S	S																	T	T	T	S	S														T	S		.	.
Template Predicted Secondary structure																								.																																																							.	.
Template SS confidence
	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V
Query Conservation
Alig confidence	.	.																																																						.	.	.	.	.																			.	.
Template Conservation	.	.																																																						.	.	.	.	.																			.	.
Template Sequence	.	.	A	L	R	A	I	W	E	Q	E	L	T	D	M	R	Q	R	I	Q	R	M	R	Q	L	F	V	N	T	L	Q	E	K	G	A	N	R	D	F	S	F	I	I	K	Q	N	G	M	F	S	F	S	G	L	T	.	.	.	.	.	K	E	Q	V	L	R	L	R	E	E	F	G	V	Y	A	V	A	S	.	.
Template Known Secondary structure	.	.																															T	T			S			T							S	S								.	.	.	.	.																	T	T	.	.
Template Predicted Secondary structure	.	.																																																						.	.	.	.	.																			.	.
Template SS confidence
			302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.						.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

	331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F
Query Conservation																																					.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	N	V	A	G	M	T	P	D	N	M	A	P	L	C	E	A	I	V	A	V	L
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G			T	T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																														373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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