Phyre 2 alignment of P00935 with d1x0ma1

Job Description P00935
Confidence 99.96% Date Wed Jan 25 15:20:10 GMT 2012

Rank 56 Aligned Residues 306

% Identity 16% Template d1x0ma1

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	48	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.														.	.	.	.	.	.	.
Query SS confidence							.														.	.	.	.	.	.	.
Query Sequence	R	R	G	N	P	T	.	R	D	V	V	Q	R	A	L	A	E	L	E	G	.	.	.	.	.	.	.	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V
Query Conservation							.														.	.	.	.	.	.	.
Alig confidence							.														.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	Y	G	T	T	K	G	F	T	P	L	R	E	T	L	M	K	W	L	G	K	R	Y	G	I	S	Q	D	N	D	I	M	I	T	S	G	S	Q	Q	A	L	D	L	I	G	R	V	F	L	N	P	G	D	I	V	V	V	E	A	P	T	Y	L	A	A	L	Q	A	F	N	F	Y	E	P	Q	Y	I	Q	I	P
Template Known Secondary structure	S				T	T																					T	T	S						S																T	T								S											T	T
Template Predicted Secondary structure
Template SS confidence
	93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.
Predicted Secondary structure																.	.	.	.	.	.	.																						.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.																						.	.	.																										.	.	.	.	.	.	.	.
Query Sequence	L	F	V	D	Q	G	D	E	Q	A	L	R	A	A	L	.	.	.	.	.	.	.	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	.	.	.	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	.	.	.	.	.	.	.	.	L
Query Conservation																.	.	.	.	.	.	.																						.	.	.																										.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																						.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	D	D	E	G	M	K	V	E	I	L	E	E	K	L	K	E	L	K	S	Q	G	K	K	V	K	V	V	Y	T	V	P	T	F	Q	N	P	A	G	V	T	M	N	E	D	R	R	K	Y	L	L	E	L	A	S	E	Y	D	F	I	V	V	E	D	D	P	Y	G	E	L	R	Y	S	G	N	P	E	K	K	I
Template Known Secondary structure			T	T																T	T	T											S	S		T	T	T																			T	T								S	S	T	T		B		S	S						T
Template Predicted Secondary structure
Template SS confidence
	173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	N	P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A
Query Conservation
Alig confidence																					.	.											.
Template Conservation																					.	.											.
Template Sequence	K	A	L	D	N	E	G	R	V	I	Y	L	G	T	F	S	K	I	L	A	.	.	P	G	F	R	I	G	W	M	V	G	.	D	P	G	I	I	R	K	M	E	I	A	K	Q	S	T	D	L	C	T	N	V	F	G	Q	V	V	A	W	R	Y	V	D	G	G	Y	L	E	K	H	I	P	E	I	R	K	F	Y
Template Known Secondary structure	G	G	G		S	S	S								S	T	T	T	T		.	.	G	G	G								.																	S		S														T	T
Template Predicted Secondary structure																					.	.											.
Template SS confidence
	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.
Template Sequence	K	P	R	R	D	A	M	L	E	A	L	E	E	F	M	P	E	G	V	K	W	T	.	.	.	.	.	.	.	.	.	K	P	E	G	G	M	F	I	W	V	T	L	P	.	D	G	I	D	S	K	K	M	L	E	R	A	I	K	K	G	V	A	Y	V	P	G	E	A	F	Y	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T					.	.	.	.	.	.	.	.	.			S	B	S	S								.	T	T													T	T						G	G	G	G		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.														.																											.	.	.	.	.	.	.	.	.
Template SS confidence
	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.										.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																										.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	A	H	R	D	V	K	N	T	M	R	L	N	F	T	Y	V	D	E	D	K	I	M	E	G	I	K	R	L	A	E	T	I	K	E	E	L	K
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	S	S					S							S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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