Phyre 2 alignment of P00935 with d1vjoa

Job Description P00935
Confidence 99.96% Date Wed Jan 25 15:20:10 GMT 2012

Rank 49 Aligned Residues 316

% Identity 14% Template d1vjoa_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.70

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence	H	D	Y	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	.	.	.	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence	G	H	L	D	P	A	F	L	A	L	X	D	E	I	Q	S	L	L	R	Y	V	W	Q	T	E	N	P	L	T	I	A	V	S	G	T	G	T	A	A	X	E	A	T	I	A	N	A	V	E	P	G	D	V	V	L	I	G	V	A	G	Y	F	G	N	R	L	V	D	X	A	G	R	Y	G	A	D	V	R	T	I
Template Known Secondary structure		T	T	S																			T				S						S	S																T	T								S	S													T	T
Template Predicted Secondary structure
Template SS confidence
	47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.

	121	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure						.	.	.														.																																										.
Query SS confidence						.	.	.														.																																										.
Query Sequence	F	V	D	Q	G	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	.	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	.	A	L	Q	N	P	L	A	L	G	A	D	L	V	L	H	S
Query Conservation						.	.	.														.																																										.
Alig confidence						.	.	.														.																																										.
Template Conservation
Template Sequence	S	K	P	W	G	E	V	F	S	L	E	E	L	R	T	A	L	E	T	H	R	P	A	I	L	A	L	V	H	A	E	T	S	T	G	A	R	Q	P	L	E	G	V	G	E	L	C	R	E	F	G	T	L	L	L	V	D	T	V	T	S	L	G	G	V	P	I	F	L	D	A	W	G	V	D	L	A	Y	S	C
Template Known Secondary structure				T	T																		S						S			T	T	T	T						T	T									T								T	T	T	T	T	T	S				T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
	127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	.	.	.	.	.	.	.	.	.	.	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.
Template Sequence	S	Q	K	G	L	G	C	S	P	G	.	.	A	S	P	F	T	X	S	S	R	A	I	E	K	L	Q	R	R	R	T	K	V	A	N	W	Y	L	D	X	N	L	L	G	K	Y	W	G	S	E	R	V	Y	H	H	T	A	P	I	N	L	Y	Y	A	L	R	E	A	L	R	L	I	A	Q	E	G	L	A	N	C
Template Known Secondary structure	S	S	S	T	T		S		S	S	.	.																T		S	S			S		S	T	T										S	T	T					S
Template Predicted Secondary structure											.	.
Template SS confidence
	207	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M
Query Conservation
Alig confidence																			.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	W	Q	R	H	Q	K	N	V	E	Y	L	W	E	R	L	E	D	I	.	G	L	S	L	H	V	E	K	E	Y	R	L	P	T	L	T	T	V	C	I	P	D	G	V	D	G	K	A	V	A	R	R	L	L	N	E	H	N	I	E	V	G	G	G	L	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T	.	T			B	S	S		G	G	G	B		S	S								T	T																							G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

	346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	.	G	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																				.
Alig confidence	.	.	.	.	.	.	.	.	.											.
Template Conservation	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	L	A	G	K	V	W	R	V	G	L	X	G	F	N	S	R	K	E	S	V	D	Q	L	I	P	A	L	E	Q	V	L	R
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	G	T	T	T								G	G	G		S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Template SS confidence
										350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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