Job Description P00935 Confidence 99.94% Date Wed Jan 25 15:20:10 GMT 2012 Rank 85 Aligned Residues 302 % Identity 13% Template d1c4ka2 SCOP info PLP-dependent transferase-like PLP-dependent transferases Ornithine decarboxylase major domain Resolution 2.70

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																										.																																																		.	.	.	.	.	.
Query SS confidence																										.																																																		.	.	.	.	.	.
Query Sequence		T	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	A	G	A	V	L	T	N	T	G	.	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L	F	V	D	Q	G	.	.	.	.	.	.
Query Conservation																										.																																																		.	.	.	.	.	.
Alig confidence																										.																															.	.	.																	.	.	.	.	.	.
Template Conservation																																																									.	.	.
Template Sequence		P	A	V	A	A	E	K	H	A	A	R	V	Y	N	A	D	K	T	Y	F	V	L	G	G	S	S	N	A	N	N	T	V	T	S	A	L	V	S	N	G	D	L	V	L	F	D	R	N	N	H	K	S	V	Y	N	.	.	.	S	A	L	A	M	A	G	G	R	P	V	Y	L	Q	T	N	R	N	P	Y	G	F
Template Known Secondary structure														T	T		S						S	S																T	T							T	T								.	.	.			T	T	T	T													T	T
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
																					126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	P	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																																						.	.
Template Conservation																																										.
Template Sequence		I	G	G	I	Y	D	S	D	F	D	E	K	K	I	R	E	L	A	A	K	V	D	P	E	R	A	K	W	K	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	N	A	H	E	V	V	K	R	I	G	H	L	C	D	Y	I	E	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M
Template Known Secondary structure							G	G	G	S									T	T	T	S	S					T		S			B	S						S	B	.		T	T	S													G	G	G	B	S							T	T			G	G	G	S	S	G	G	G
Template Predicted Secondary structure																																										.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
														185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.													.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	N	S	S	P	L	L	I	D	D	L	G	P	E	D	P	G	I	I	V	V	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	L	R	Y	C	D	H	K	H	F	N	N	S	F	N	L	F	M	S	T	S	P	F	Y	P	M	Y	A	A	L	D	V	N	A
Template Known Secondary structure		G	G	G		T	T	S						T	T	S													S	S			T	T									G	G	G	T	T	S	T	T															S		S	S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	M	Q	E	G	E	A	G	R	K	L	W	H	D	L	L	I	T	T	I	E	A	R	K	K	L	I	K	A	G	S	M	F	R	P	F	V	P	P	V	V	N	G	K	K	W	E	D	G	D	T	E	D	M	A	N	N	I	D	Y	W	R	F	E	K	G	A	K	W	H	A	Y	E	G	Y	G	D	N	Q	Y
Template Known Secondary structure					S																									T	T		S	S			S	S		S			T	T			G	G	G	S						T	T		G	G	G	G	B			T	T		T	T	T			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
																											309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	V	D	P	N	K	F	M	L	T	T	P	G	I	N	P	E	T	G	D	Y	E	D	F	G	V	P	A	T	I	V	A	N	Y	L	R	D	H	G	I	I	P	E	K	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	S	I	L	F	L
Template Known Secondary structure					T	T							S	S			T	T	T	T				S	S														T	T				S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.																												.	.	.	.	540	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	P	A	E	T	P	A	K	M	N	N	L	I	T	Q	L	L	Q	L	Q	R
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions