Phyre 2 alignment of P00935 with d1b9ha

Job Description P00935
Confidence 100.00% Date Wed Jan 25 15:20:10 GMT 2012

Rank 25 Aligned Residues 326

% Identity 13% Template d1b9ha_

SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence	Y	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	.	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L	F	V	D	Q
Query Conservation																																											.
Alig confidence																																											.																												.
Template Conservation																																																																							.
Template Sequence	W	W	R	M	G	G	D	E	V	N	S	F	E	R	E	F	A	A	H	H	G	A	A	H	A	L	A	V	T	N	G	T	H	A	L	E	L	A	L	Q	V	M	G	V	G	P	G	T	E	V	I	V	P	A	F	T	F	I	S	S	S	Q	A	A	Q	R	L	G	A	V	.	T	V	P	V	D	V	D	A	A
Template Known Secondary structure		B	T	T	T		S													T	T		S						S													T	T			T	T							S	S	S		T									T	T			.						B		T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence	G	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	.	.	A	L	Q	N	P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G
Query Conservation																																																								.	.
Alig confidence																																																								.	.
Template Conservation
Template Sequence	T	Y	N	L	D	P	E	A	V	A	A	A	V	T	P	R	T	K	V	I	M	P	V	H	M	A	G	L	M	A	D	M	D	A	L	A	K	I	S	A	D	T	G	V	P	L	L	Q	D	A	A	H	A	H	G	A	R	W	Q	G	K	R	V	G	E	L	D	S	I	A	T	F	S	F	Q	N	G	K	L	M
Template Known Secondary structure	T			B											T	T							B		G	G	G																T			B					T	T		T	T				T	T			G	G	G	S	S	S								T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.																		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence	T	A	G	.	E	G	G	A	V	V	F	P	D	G	E	T	E	K	Y	E	T	A	F	L	R	H	S	C	G	R	P	R	D	D	R	R	Y	F	H	K	I	A	G	S	N	M	R	L	N	E	F	S	A	S	V	L	R	A	Q	L	A	R	L	D	E	Q	I	A	V	R	D	E	R	W	T	L	L	S	R	L
Template Known Secondary structure		S	S	.	S								T	T												T	B	T	T			T	T		S	S					S				B		B		B												T	T
Template Predicted Secondary structure				.
Template SS confidence
	191	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

	266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.
Template Sequence	L	G	A	I	D	G	V	.	.	.	.	.	.	.	.	.	.	V	P	Q	G	G	D	V	R	A	D	R	N	S	H	Y	M	A	M	F	R	I	P	G	L	T	E	E	R	R	N	A	L	V	D	R	L	V	E	A	G	L	P	A	F	A	A	F	R	A	I	Y	R	T	D	A	F	W	E	L	G	A	P	D
Template Known Secondary structure			T	S	T	T		.	.	.	.	.	.	.	.	.	.							T	T			B				S							T	T																T	T										G	G	G	S						S	S			S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Template SS confidence
	270	.	.	.	.	.	.											.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

	346	.	.	.	350	.	.	.	.	.							.	.	.	.	360	.	.	.	.	.	.						.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure											.	.	.	.	.	.												.	.	.	.	.
Query SS confidence											.	.	.	.	.	.												.	.	.	.	.
Query Sequence	A	P	E	A	R	A	A	A	G	I	.	.	.	.	.	.	S	E	T	L	L	R	I	S	T	G	I	.	.	.	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A
Query Conservation											.	.	.	.	.	.												.	.	.	.	.
Alig confidence											.	.	.	.	.	.												.	.	.	.	.
Template Conservation
Template Sequence	E	S	V	D	A	I	A	R	R	C	P	N	T	D	A	I	S	S	D	C	V	W	L	H	H	R	V	L	L	A	G	E	P	E	L	H	A	T	A	E	I	I	A	D	A	V	A	R	A
Template Known Secondary structure	S								T																G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions