Job Description P00935 Confidence 99.93% Date Wed Jan 25 15:20:10 GMT 2012 Rank 120 Aligned Residues 280 % Identity 15% Template c3mc6C_ PDB info PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 Resolution 3.15 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.									90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		D	V	V	Q	R	A	L	A	E	L	E	G	G	A	.	.	.	.	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	.	.	.	.	.	.	.	.	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L	F	V
Query Conservation																.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.																						.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		S	E	V	V	S	M	V	L	R	M	F	N	A	P	S	D	T	G	C	G	T	T	T	S	G	G	T	E	S	L	L	L	A	C	L	S	A	K	M	Y	A	L	H	H	R	G	I	T	E	P	E	I	I	A	P	V	T	A	H	A	G	F	D	.	.	.	.	K	A	A	Y	Y	F	G	M	K	L	R	H	V
Template Known Secondary structure												T	T			T	T	T							S	S																				S			S	S							T	T	S						.	.	.	.						S
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.
		123	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.														.	.
Predicted Secondary structure					.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Q	G	.	.	.	.	.	.	D	E	Q	A	L	R	A	A	L	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N
Query Conservation					.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	D	P	T	T	Y	Q	V	D	L	G	K	V	K	K	F	I	N	K	N	T	V	L	L	V	G	S	A	P	N	F	P	H	G	I	A	D	D	I	E	G	L	G	K	I	A	Q	K	Y	K	L	P	L	H	V	D	S	C	L	G	S	F	I	V	S	F	M	E	K	A	G	Y	K	N	L	P	L	L	D
Template Known Secondary structure			B		T	T	T		S	B		T	T	T	T	G	G	G			S	S								T	T		T	T	T					S		T	T	T	T	T					T	T							T	T	T	T					G	G	G	T	T	T	T			S					S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.																.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	D	S	Y	L	L	L	R	G	L	R	T	L
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		F	R	V	P	G	V	T	S	I	S	C	D	T	H	K	Y	G	F	A	P	K	G	.	.	S	S	V	I	M	Y	R	N	S	D	L	R	M	H	Q	Y	Y	V	N	P	A	W	T	G	G	L	Y	G	S	P	T	L	A	G	S	R	P	G	A	I	V	V	G	C	W	A	T	M	V	N	M	G	E	N	G	Y
Template Known Secondary structure		T	T	S	T	T								T	T	T	T	T				S	S	.	.							S	S					T	T	T	S			B	T	T		T	T	S		B			S	S	S		S	S		B
Template Predicted Secondary structure																								.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	.	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L
Query Conservation																						.
Alig confidence																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		I	E	S	C	Q	E	I	V	G	A	A	M	K	F	K	K	Y	I	Q	E	N	I	P	D	L	D	I	M	G	N	P	R	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	S	F	S	S	K	T	.	.	L	N	I	H	E	L	S	D	R	L	S	K	K	G	W	H	F	N	A
Template Known Secondary structure																						S		T	T					S				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	.	.	T	T										T	T	T		B
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.																		.	.	480	.	.	.	.	.			.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.				.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																																									.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	V	A	L	H	M	A	F	T	R	L	S	A	H	V	V	D	E	I	C	D	I	L	R	T	T	V	Q	E	L	K	S
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S									T	T	T	T		T																T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		505	.																											.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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