Phyre 2 alignment of P00935 with c3l44A

Job Description P00935
Confidence 99.84% Date Wed Jan 25 15:20:10 GMT 2012

Rank 207 Aligned Residues 295

% Identity 20% Template c3l44A_

PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase

Resolution 2.05 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.																					.	.																																.	.	.	.	.	.	.	.	.
Query SS confidence																		.																					.	.																																.	.	.	.	.	.	.	.	.
Query Sequence	N	P	T	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	.	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	.	.	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	.	.	.	.	.	.	.	.	.
Query Conservation																		.																					.	.																																.	.	.	.	.	.	.	.	.
Alig confidence																		.																					.	.																																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	A	L	E	V	K	F	A	K	X	L	K	E	A	X	P	A	L	D	K	V	R	F	V	N	S	G	T	E	A	V	X	T	T	I	R	V	A	R	A	Y	T	G	R	T	K	I	X	K	F	A	G	C	Y	H	G	H	S	D	L	V	L	V	A	L	G	T	P	D	S	A	G	V	P	Q	S	I	A	Q	E
Template Known Secondary structure																T	T		S						S	S																									T	T					S	S	G	G	G	G	B					B	S	S	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
	94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.
Predicted Secondary structure																		.	.	.																					.	.	.	.																																.	.	.
Query SS confidence																		.	.	.																					.	.	.	.																																.	.	.
Query Sequence	V	L	F	V	D	Q	G	D	E	Q	A	L	R	A	A	L	A	.	.	.	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	.	.	.	.	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	P	L	A	.	.	.	L	G
Query Conservation																		.	.	.																					.	.	.	.																																.	.	.
Alig confidence																		.	.	.																					.	.	.	.																																.	.	.
Template Conservation
Template Sequence	V	I	T	V	P	F	N	N	V	E	T	L	K	E	A	L	D	K	W	G	H	E	V	A	A	I	L	V	E	P	I	V	G	N	F	G	I	V	E	P	K	P	G	F	L	E	K	V	N	E	L	V	H	E	A	G	A	L	V	I	Y	D	E	V	I	T	A	F	R	F	X	Y	G	G	A	Q	D	L	L	G
Template Known Secondary structure						T	T													G	G	G								S	S	B		T	T	S		B				T	T											T	T	T								T	T	T	T	T	T	S	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence	V	T	P	D	L	T	A	L	G	V	I	G	G	G	L	P	.	.	.	I	G	A	Y	G	G	K	K	E	I	X	E	Q	V	A	P	L	G	P	A	Y	Q	A	G	T	X	A	G	N	P	A	S	X	A	S	G	I	A	C	L	E	V	L	Q	Q	E	G	L	Y	E	K	L	D	E	L	G	A	T	L	E	K
Template Known Secondary structure				S							T	T	T	T	S	S	.	.	.												T	T	B	T	T	T	S	S	B					T	T	T	T																T	S	T	T
Template Predicted Secondary structure																	.	.	.
Template SS confidence
	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.													.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Sequence	G	I	L	E	Q	A	A	K	H	N	I	D	I	T	.	.	.	.	.	.	.	.	.	.	L	N	R	L	K	G	A	L	T	V	Y	F	T	T	N	T	I	E	D	Y	D	A	A	Q	D	T	D	G	E	X	F	G	K	F	F	K	L	X	L	Q	E	G	V	N	L	A	P	S	K	Y	E	A	.	.	.	.
Template Known Secondary structure									T	T					.	.	.	.	.	.	.	.	.	.					T	T							S	S	S				S							S															T	T					S	S	T	T			.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template SS confidence
	339	340	.	.	.	.	.	.	.	.	.	350	.	.											.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																															.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	F	L	T	T	E	H	T	K	E	D	I	E	Y	T	I	E	A	V	G	R	A	F	A	A	L	A	D
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																								405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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