Job Description P00935 Confidence 99.95% Date Wed Jan 25 15:20:10 GMT 2012 Rank 72 Aligned Residues 307 % Identity 15% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		55	.	.	.	.	60	.	.	.	.	.	.										.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.																										.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.																										.	.	.	.
Query Sequence		D	V	V	Q	R	A	L	A	E	L	E	G	.	.	.	.	.	.	.	.	.	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	.	.	.	.	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V	L	F
Query Conservation														.	.	.	.	.	.	.	.	.																										.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation
Template Sequence		N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D
Template Known Secondary structure																T	T	T					G	G	G					S	S																	G	G	G	S								S			T									T	T									B
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		122	.				.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure				.	.	.													.	.	.	.	.																			.	.	.																																.	.	.	.	.	.
Query SS confidence				.	.	.													.	.	.	.	.																			.	.	.																																.	.	.	.	.	.
Query Sequence		V	D	.	.	.	Q	G	D	E	Q	A	L	R	A	A	L	A	.	.	.	.	.	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	.	.	.	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	P	.	.	.	.	.	.
Query Conservation				.	.	.													.	.	.	.	.																			.	.	.																																.	.	.	.	.	.
Alig confidence				.	.	.													.	.	.	.	.																			.	.	.																																.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R	F	H	S	F
Template Known Secondary structure		G	G	G	T	T	B														T	T	T	S									S	S		T	T	T																				T								T	T	T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
													185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																															.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																															.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	.	.	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																															.	.																		.
Template Conservation																																																														.
Template Sequence		K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	.	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G
Template Known Secondary structure								T						T	T									S	S	S	S	T	T			S	S	S									S																S			.													T					T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.													.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	L	R	R	F	L	G	G	L	S
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.
Template Sequence		E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	.	.	.	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E
Template Known Secondary structure		S	T	T																												T	S	T	T					.	.	.				B	S	S																			T	T	S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																																																	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	T	G	I	C	V	V	P	G	S	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N	F	L	E
Template Known Secondary structure					B					G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			B							S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.																					.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions