Job Description P00935 Confidence 99.94% Date Wed Jan 25 15:20:10 GMT 2012 Rank 90 Aligned Residues 310 % Identity 17% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		55	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																			.	.
Query SS confidence														.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																			.	.
Query Sequence		D	V	V	Q	R	A	L	A	E	L	E	G	.	.	.	.	.	.	.	.	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	.	.	.	.	.	.	.	.	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	.	.	D	S	L	A	K	R	G	C
Query Conservation														.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																			.	.
Alig confidence														.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L
Template Known Secondary structure																						G	G	G					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		117	.	.	120	.	.	.	.	.											.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.											.	.	.																			.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.											.	.	.																			.	.	.
Query Sequence		Y	R	V	L	F	V	D	Q	G	.	.	.	.	.	.	.	.	.	.	D	E	Q	A	L	R	A	A	L	A	.	.	.	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	.	.	.	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A
Query Conservation											.	.	.	.	.	.	.	.	.	.											.	.	.																			.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.											.	.	.																			.	.	.
Template Conservation
Template Sequence		P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F
Template Known Secondary structure										T	T																T						T	T									S	S		T	T	T																			T	T								T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		181	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.
Query SS confidence				.	.	.	.
Query Sequence		L	Q	.	.	.	.	N	P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q
Query Conservation				.	.	.	.
Alig confidence				.	.	.	.																																.
Template Conservation																																							.
Template Sequence		P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	I	G	L	P	G	X	R	T	G	I	I	V	A	.	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N
Template Known Secondary structure		T			B		S								T	T							S	G	G	G	T		G	G	G								.																T	S	S															T	S
Template Predicted Secondary structure																																							.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H
Query Conservation
Alig confidence											.	.	.																	.	.	.	.
Template Conservation											.	.	.																	.	.	.	.
Template Sequence		E	I	K	P	F	Y	Q	K	Q	.	.	.	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	.	.	.	.	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D
Template Known Secondary structure		T									.	.	.												S	S	S	S	S	.	.	.	.								B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S
Template Predicted Secondary structure											.	.	.																	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.					.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation																																.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	D	Y	Q	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	C	I	R	X	S	I	A	A	D	E	Q	T	L	I	D	G	I	K	V	I	G	E	V	V	R	E	L	Y	D
Template Known Secondary structure			T	T		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S						S		S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		404	.	.	.	.	.	410														.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions