Phyre 2 alignment of P00935 with c3i4jC

Job Description P00935
Confidence 99.83% Date Wed Jan 25 15:20:10 GMT 2012

Rank 210 Aligned Residues 293

% Identity 17% Template c3i4jC_

PDB info PDB header:transferase Chain: C: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans

Resolution 1.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.								.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																			.	.	.	.	.	.	.
Query SS confidence																							.	.																			.	.	.	.	.	.	.
Query Sequence	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	A	.	.	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	.	.	.	.	.	.	.	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y
Query Conservation																							.	.																			.	.	.	.	.	.	.
Alig confidence																							.	.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	Q	F	S	S	D	V	L	E	E	Y	A	G	R	L	A	R	F	V	G	L	P	T	F	R	F	W	A	V	S	G	G	S	E	A	T	E	S	A	V	K	L	A	R	Q	Y	H	V	E	R	G	E	P	G	R	F	K	V	I	T	R	V	P	S	R	E	L	Y	T	P	L	M	R	P	E	A	W	P	K	L
Template Known Secondary structure	T	T																	T	T		T	T							S	S																			T	T		T	T								T	T			T	T	T	G	G	G	G	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
	67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.

	118	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.		180
Predicted Secondary structure									.	.	.										.	.	.	.																		.	.	.	.	.																											.	.	.	.			.
Query SS confidence									.	.	.										.	.	.	.																		.	.	.	.	.																											.	.	.	.			.
Query Sequence	R	V	L	F	V	D	Q	G	.	.	.	D	E	Q	A	L	R	A	A	L	.	.	.	.	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	.	.	.	.	.	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	.	.	.	.	S	P	.	A
Query Conservation									.	.	.										.	.	.	.																		.	.	.	.	.																											.	.	.	.			.
Alig confidence									.	.	.										.	.	.	.																		.	.	.	.	.																											.	.	.	.			.
Template Conservation
Template Sequence	P	K	P	D	P	A	R	N	G	A	E	D	A	E	G	L	R	A	L	L	E	R	E	G	P	E	T	V	A	A	F	M	A	E	P	V	V	G	A	S	D	A	A	L	A	P	A	P	G	Y	Y	E	R	V	R	D	I	C	D	E	A	G	I	I	F	I	A	D	E	V	M	S	G	M	G	R	C	G	S	P
Template Known Secondary structure					T	T	S							T											G	G	G								S	S			G	G	G	T	T					T	T													T								T	T	T	T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Q	N	P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q
Query Conservation
Alig confidence																							.											.
Template Conservation																							.											.
Template Sequence	L	A	L	S	R	W	S	G	V	T	P	D	I	A	V	L	G	K	G	L	A	A	.	G	Y	A	P	L	A	G	L	L	A	.	A	P	Q	V	Y	E	T	V	M	G	G	F	M	H	G	F	T	Y	A	G	H	P	V	S	V	A	A	G	L	S	V	L	D	I	V	E	R	E	D	L	T	G	A	A	K	E
Template Known Secondary structure	S	G	G	G	G	T	T	T				S						G	G	G	T	T	.	T	S	S								.																	T	T	T	T																		T	T
Template Predicted Secondary structure																							.											.
Template SS confidence
	244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	G	A	Q	L	L	A	G	L	Q	A	L	Q	A	R	F	P	Q	M	M	Q	.	.	.	.	.	.	.	.	.	.	.	V	R	G	T	G	L	L	L	G	V	V	L	G	D	L	.	.	I	A	S	R	I	G	A	A	A	L	K	R	G	L	I	T	Y	D	H	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T				.	.	.	.	.	.	.	.	.	.	.					T	T										.	.													T	B						.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.																.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.												.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

	341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A	N	K
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	L	G	P	P	L	S	I	T	A	A	E	V	D	G	L	L	A	L	L	A	G	A	L	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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