Job Description P00935 Confidence 99.97% Date Wed Jan 25 15:20:10 GMT 2012 Rank 39 Aligned Residues 299 % Identity 15% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	R	A	H	D	Y	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	L	A	E	L	E	G	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G	C	Y	R	V
Query Conservation
Alig confidence																																																																				.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		S	L	F	M	S	A	S	F	L	Q	N	D	Y	D	K	P	M	I	E	K	R	L	A	K	F	T	G	F	D	E	C	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	Q	T	I	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	.	.	.	.	E	G	A	R	Y	A	N	A	Q	A
Template Known Secondary structure					S	B	G	G	G	G		S	T	T	T	S												T		S						S																T	T							T	T	S						.	.	.	.						T	T
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.					.	.	140	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.										.	.
Predicted Secondary structure																					.																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																					.																																																		.	.	.	.	.	.	.	.	.
Query Sequence		L	F	V	D	Q	G	D	E	Q	A	L	R	A	A	L	A	E	K	P	.	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	I	A	K	I	C	H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	S	P	A	L	Q	N	P	L	A	L	.	.	.	.	.	.	.	.	.	G	A
Query Conservation																					.																																																		.	.	.	.	.	.	.	.	.
Alig confidence																					.																																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	P	F	M	H	N	N	C	D	H	L	R	M	L	I	Q	R	H	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D	E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R	E	V
Template Known Secondary structure						T	T														S							S	B		T	T	T			B													T	T								T	T	T	B	T	T	B	S	G	G	G							T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	N	I	G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I	I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G	L	S	Q	L
Template Known Secondary structure		S						S	S	S	T	T		S	S							S	S	S	G	G	G	T											S	B																				T																					T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	T	I	R	S	E	S	Q	I	I	G	L	E	T	G	.	D	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N	K	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S	S								.	S														T	T								T	T	S	S		T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	E	D	G	E	D	L	I	A	D	L	E	N	G	F	R	A	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A	K	I	I	E	V	C	S	D	A
Template Known Secondary structure		.	.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions