Return to main results Retrieve Phyre Job Id

Job DescriptionP00935
Confidence99.91%DateWed Jan 25 15:20:10 GMT 2012
Rank159Aligned Residues304
% Identity11%Templatec3g0tA_
PDB info PDB header:transferaseChain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60...... ...70.........80.........90... ......100.........110.........120...
Predicted Secondary structure 

........








....









Query SS confidence 










. . . . . . . .


























. . . .





























Query Sequence  VVQRALAELEG. . . . . . . . GAGAVLTNTGMSAIHLVTTVFLKPGDL. . . . LVAPHDCYGGSYRLFDSLAKRGCYRVLFVD
Query Conservation   

   
   
........ 
  
   

  

   
 

   

 ....

                           
Alig confidence 










........


























....





























Template Conservation   

 


       
    
  
 

 
    
     

  



    

   
 
  
       
     
     
Template Sequence  ELKQEASRFAKLFVNIDIPARACVPTVGSXQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEY
Template Known Secondary structure 




GGGSTTS
TT
S

S

T


GGGG
Template Predicted Secondary structure 





























Template SS confidence 















































































   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   124. ....130.........140.........150.. .......160.........170.........180... .
Predicted Secondary structure 

...













...












.............
Query SS confidence 

. . .


























. . .






























. . . . . . . . . . . . .
Query Sequence  QG. . . DEQALRAALAEKPKLVLVESPSNPLLR. . . VVDIAKICHLAREVGAVSVVDNTFLSPALQN. . . . . . . . . . . . . P
Query Conservation    ...
   
          
      
  
 ...   
  
  

   
  



 
 
 
    ............. 
Alig confidence 

...


























...






























.............
Template Conservation                    
 

   
 



 
   
 
  
   
    
 

 

 
  
 
                
Template Sequence  RGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCXTDEELRIIGELATKHDVIVIEDLAYFGXDFRKDYSHPGEPLYQPSV
Template Known Secondary structure 
TTTTT


SS
TTT




TT

TTTT

TTS


STTSS




G
Template Predicted Secondary structure 
















































Template SS confidence 















































































   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   185....190.........200.........210.........220.........230.........240.........250.........260..
Predicted Secondary structure 


























..
Query SS confidence 













































































. .
Query Sequence  LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAI. .
Query Conservation     
 
    
  
   
      
            
       
       
      
             
  
..
Alig confidence 















.




























































..
Template Conservation        

    

  .   
 


  
     
                                    
 
  
 
  
Template Sequence  ANYTDNYILALSSSAF. SYAGQRIGVLXISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGXAAXLKA
Template Known Secondary structure  GGT
S




.S
GGG



B
GGGS
SBTTSSS
Template Predicted Secondary structure 






.














Template SS confidence 















































































   245....250.........260 .........270.........280.........290.........300.........310.........320...
 
   263......270.........280.........290. ........300.........310.........320.. .......330..
Predicted Secondary structure  ........








.










.







Query SS confidence  . . . . . . . .




























.






























.









Query Sequence  . . . . . . . . VKYLQTQPLVKKLYHPSLPENQGHEIAAR. QQKGFGAMLSFELDGDEQTLRRFLGGLSLFT. LAESLGGVES
Query Conservation  ........   
     
       
           .        
   
             
    .
  
 
   
Alig confidence  ........




























.






























.








.
Template Conservation           
    
  

      
   

    
     
  
 
       
 

  
   

  
 
 
 

  
.
Template Sequence  CNDGEYNFRDSVIEYGRKARIXKKXFLDNGFNIVYDKDGNEPLADGFYFTVGYKGXDSSKLIEKFVRYGXCAITLKTTG.
Template Known Secondary structure  TTS

TTTSS
TT

SSSTT

TT
STTTT.
Template Predicted Secondary structure 
























.
Template SS confidence 















































































   325....330.........340.........350.........360.........370.........380.........390.........400...
 
   333......340.........350.........360...... ...370.........380..
Predicted Secondary structure 




















...

Query SS confidence 

































. . .















Query Sequence  LISHAATMTHAGMAPEARAAAGISETLLRISTGI. . . EDGEDLIADLENGFRA
Query Conservation 
                    
     





 ...
   


  
  

 
Alig confidence  .....................












...















Template Conservation  .....................
   

 

       
 
     

  
   
Template Sequence  . . . . . . . . . . . . . . . . . . . . . SKRNEAXRICTSLLPESQFPDLEKRLQXLNAE
Template Known Secondary structure  .....................


TT

SSS
GGG
Template Predicted Secondary structure  .....................










Template SS confidence 




















































   404.....410.........420.........430.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions