Job Description P00935 Confidence 99.73% Date Wed Jan 25 15:20:10 GMT 2012 Rank 233 Aligned Residues 299 % Identity 14% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.									.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																						.	.																							.	.	.	.	.	.	.	.
Query SS confidence																						.	.																							.	.	.	.	.	.	.	.
Query Sequence		Y	S	R	R	G	N	P	T	R	D	V	V	Q	R	A	L	A	E	L	E	.	.	G	G	A	G	A	V	L	T	N	T	G	M	S	A	I	H	L	V	T	T	V	F	.	.	.	.	.	.	.	.	L	K	P	G	D	L	L	V	A	P	H	D	C	Y	G	G	S	Y	R	L	F	D	S	L	A	K	R	G
Query Conservation																						.	.																							.	.	.	.	.	.	.	.
Alig confidence																						.	.																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	S	K	V	Y	F	G	L	G	G	S	D	A	N	E	T	N	V	K	L	I	W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T	G	S	L	T	G	L	E
Template Known Secondary structure			T	T																	S		T	T								S	S																			T	T		T	T								T	T					S	S							S			G
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.																												.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.
Query Sequence		C	Y	R	V	L	F	V	D	Q	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	A	L	R	A	A	L	.	.	.	.	A	E	K	P	K	L	V	L	V	E	S	P	S	N	P	L	L	R	V	V	D	.	.	.	.	I	A	K	I	C
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V	A	E	L	E	A	L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A	G	Y	W	E	A	I	Q
Template Known Secondary structure		G	G	T	T	T	T	T		S		T	T							S		G	G	G		S		T	T																							G	G	G								S	S	B	S	T	T	T		B				T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.								.	.
Predicted Secondary structure																			.	.	.	.																																																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																																																			.	.	.	.	.	.	.
Query Sequence		H	L	A	R	E	V	G	A	V	S	V	V	D	N	T	F	L	.	.	.	.	S	P	A	L	Q	N	P	L	A	L	G	A	D	L	V	L	H	S	C	T	K	Y	L	N	G	H	S	D	V	V	A	G	V	V	I	A	K	D	P	D	V	V	T	E	L	A	W	W	A	N	.	.	.	.	.	.	.	N	I
Query Conservation																			.	.	.	.																																																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																																				.	.														.	.	.	.	.	.	.
Template Conservation																																																										.	.
Template Sequence		T	V	L	N	K	H	D	I	L	L	V	A	D	E	V	V	T	G	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	T	I	A	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	.	.	S	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G	P	I	G	H	G	W
Template Known Secondary structure								T								T	T	T	S	S	S	T	T	S	S	S							T				S						G	G	G	T	T	T	S	S								.	.																	S		S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		G	V	T	G	G	A	F	D	S	Y	L	L	L	R	G	L	R	T	L	V	P	R	M	E	L	A	Q	R	N	A	Q	A	I	V	K	Y	L	Q	T	Q	P	L	V	K	K	L	Y	H	P	S	L	P	E	N	Q	G	H	E	I	A	A	R	Q	Q	K	G	F	G	A	M	L	S	F	E	L	D	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																							.	.																															.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation																							.	.																															.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	S	A	H	P	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	.	.	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T	X	A	E	A	L	S	Q	H	A	N	V	G	D	.	.	.	.	.	.	.	.	.	.	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D
Template Known Secondary structure		T	T	T	T																		.	.	T	T																					T	T	S	T	T				.	.	.	.	.	.	.	.	.	.				S	S	S								S	B	T	T
Template Predicted Secondary structure																							.	.																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.											.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
								306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.					.	.	.	370	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																														.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																														.	.	.	.
Query Sequence		.	.	.	.	.	.	G	D	E	Q	T	L	R	R	F	L	G	G	L	S	L	F	T	L	A	E	S	L	G	G	V	E	S	L	I	S	H	A	A	T	M	T	H	A	G	M	A	P	E	A	R	A	A	A	G	I	S	E	T	L	L	R	I	S	T	G	I	.	.	.	.	E	D	G	E	D	L	I	A	D
Query Conservation		.	.	.	.	.	.																																																														.	.	.	.
Alig confidence		.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	T	F	F	D	A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	D	K	I	I	A	R	A	X	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	I	L	G	F	A	P	P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G
Template Known Secondary structure		T	T	B				G	G	G																						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.																										.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	G	F	R	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	R	A	V	K	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		448	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions